Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017424

Physical Location & Seq

Genomic Coordinates Reverse (-)

63369019 .. 63369464

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCCGAAGTCAATGAAGAATCCAAGGACTGCTGTGATCAAGACCTCAATCATGGCCGGCTTCAGCTGATATCTTCAATGCATTTGGTGACAGTTCGCTCGACTCCACCACCCCTGATGCATTTGACCAATTGGTGTCTTGGATTGCATGATGGGTTTTGGCAGCTGTTGCAATTGCTGCTGGAGGCCTTACAATACAGGACGTTTGTTTGTGAAGAAGCAGACAAGGCGCTAAGAGCAGTGGTGAAGTATTTGACTACTCTGCCTCTACTTCATAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGTCAGAGCCAAAGCTGCAATATCCATCTACATTTTTGTTTTCGGACCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

132

Amino Acids

14.95

Weight (kDa)

8.98

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168241 RchiOBHm_Chr2g0173731 RchiOBHm_Chr4g0425601
rosa_laevigata	RLG00000015228
rosa_roxburghii	Rroxscaffold_1G00029220 Rroxscaffold_5G00350310
rosa_rugosa	Rorug01G0170700 Rorug01G0170700 Rorug03G0218300
rosa_samantha	Rh2BG662000 Rh2DG677200 Rh6BG031600 Rh7BG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	108
AluBI	AGCT	3 cut(s)	97, 196, 356
AluI	AGCT	3 cut(s)	97, 196, 356
AoxI	GGCC	2 cut(s)	85, 216
ApeKI	GCWGC	3 cut(s)	193, 208, 356
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	130, 286, 316
AvaII	GGWCC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	195, 205, 343
BccI	CCATC	2 cut(s)	176, 374
BclI	TGATCA	2 cut(s)	24, 67
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	3 cut(s)	194, 209, 357
BlsI	GCNGC	3 cut(s)	195, 210, 358
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmsI	GCATC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	11, 54
Bse118I	RCCGGY	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	11, 54
BseXI	GCAGC	3 cut(s)	195, 205, 343
BshFI	GGCC	2 cut(s)	87, 218
BsiSI	CCGG	1 cut(s)	88
BsnI	GGCC	2 cut(s)	87, 218
Bsp143I	GATC	2 cut(s)	24, 67
BspANI	GGCC	2 cut(s)	87, 218
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	11, 54
BssMI	GATC	2 cut(s)	24, 67
BssT1I	CCWWGG	2 cut(s)	11, 54
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	2 cut(s)	199, 208
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	2 cut(s)	27, 70
BstMBI	GATC	2 cut(s)	24, 67
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 208, 257, 266, 356
BstV1I	GCAGC	3 cut(s)	195, 205, 343
BsuRI	GGCC	2 cut(s)	87, 218
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	386
CviAII	CATG	3 cut(s)	83, 179, 329
CviJI	RGCY	9 cut(s)	87, 91, 97, 196, 218, 310, 318, 350, 356
CviKI_1	RGCY	9 cut(s)	87, 91, 97, 196, 218, 310, 318, 350, 356
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	26, 69
DpnII	GATC	2 cut(s)	24, 67
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	11, 54
Eco147I	AGGCCT	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	11, 54
EcoT22I	ATGCAT	2 cut(s)	114, 153
ErhI	CCWWGG	2 cut(s)	11, 54
FaeI	CATG	3 cut(s)	86, 182, 332
FaiI	YATR	5 cut(s)	84, 180, 306, 321, 330
FatI	CATG	3 cut(s)	82, 178, 328
FbaI	TGATCA	2 cut(s)	24, 67
Fnu4HI	GCNGC	3 cut(s)	194, 209, 357
Fsp4HI	GCNGC	3 cut(s)	194, 209, 357
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	3 cut(s)	194, 209, 357
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	87, 218
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	86, 182, 332
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	7, 50, 133
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	130, 286, 316
Hpy188I	TCNGA	4 cut(s)	24, 37, 347, 386
Hpy188III	TCNNGA	2 cut(s)	28, 71
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	112, 151, 178, 202, 359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 208, 257, 266, 356
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	86, 182, 332
HspAI	GCGC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Ksp22I	TGATCA	2 cut(s)	24, 67
Kzo9I	GATC	2 cut(s)	24, 67
LpnPI	CCDG	4 cut(s)	101, 158, 197, 214
Lsp1109I	GCAGC	3 cut(s)	195, 205, 343
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	118, 322
MalI	GATC	2 cut(s)	26, 69
MboI	GATC	2 cut(s)	24, 67
MboII	GAAGA	4 cut(s)	16, 59, 96, 257
MfeI	CAATTG	2 cut(s)	160, 203
MluCI	AATT	2 cut(s)	160, 203
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	5 cut(s)	43, 86, 208, 306, 347
Mph1103I	ATGCAT	2 cut(s)	114, 153
MroNI	GCCGGC	1 cut(s)	87
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	97, 196
MspI	CCGG	1 cut(s)	88
MunI	CAATTG	2 cut(s)	160, 203
MwoI	GCNNNNNNNGC	5 cut(s)	199, 208, 257, 266, 356
NaeI	GCCGGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	24, 67
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	86, 182, 332
NmuCI	GTSAC	2 cut(s)	118, 322
NsiI	ATGCAT	2 cut(s)	114, 153
PceI	AGGCCT	1 cut(s)	218
PdiI	GCCGGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	7, 50
PkrI	GCNGC	3 cut(s)	195, 210, 358
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	386
PvuII	CAGCTG	2 cut(s)	97, 196
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	3 cut(s)	194, 209, 357
Sau3AI	GATC	2 cut(s)	24, 67
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	127
SetI	ASST	8 cut(s)	35, 78, 99, 198, 236, 339, 358, 391
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	2 cut(s)	160, 203
SseBI	AGGCCT	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	11, 54
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	160, 203
TfiI	GAWTC	2 cut(s)	7, 50
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	118, 322
TseI	GCWGC	3 cut(s)	193, 208, 356
Tsp45I	GTSAC	2 cut(s)	118, 322
TspDTI	ATGAA	3 cut(s)	17, 60, 293
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	386
Zsp2I	ATGCAT	2 cut(s)	114, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.