Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017424

Physical Location & Seq

Genomic Coordinates Reverse (-)

89767759 .. 89777581

Gene Structure 9823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG677200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGAAGAAGGAATGGAAAGGAATAAACGATGACATCAATATTTGTGAGAAACAACTATTATATGCTGAAGATTTGGTAGTGATAGCTGATAGCTTGCTTATAGGAGAGACAAACGTGCAGGACACGTCCACCTACTCATCAATTGAACGTAATGAAGCAACTATAAACCATTATGACATCAAATCTGATTTAGCCGCTAATTTTCTTTCTTTGGAAAACAGATATACAGAAATTCTGTTGCAATTGCTGCTGGAGGCCTCACAAGACAAGACGTTTGTTTGCGAAGAAGCAGACAAGGCGCTAAGAGCAGTGGTGAAGTATTTGACAACTCTGCCTCTGCTTCATAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGAAACTATAGGGAGAAGCAGAAGAGGAATTAGTCATGCAACAAGAAATCAAGAAATCAAGCTTTCAAGGAAGTTGCCTCCAGAAACAAGATATGAAACAGCGTCTAATGATGTGTGTCAGGTCAGGTTTAGGTTCAATGTTGACAAGCTTTTAACTAATATATTCGCTATCAGATTTCAAGAAACTTCTGTTTGTAGTATCAGTATTGCTTGCTTTGTGGTTGAGTTGCTGCTTTATACCATTCACATACATTTGCCTATGCTTAGATTTATCAAAAAAGAGTCGTTCTGTAACTACGCCTTTATAAAAGGTATCTTTGATGTTGATCATTTCATTGATTACCTGAAGGAGGATGTACGAATTGTTCGTGACAATTCCACAGAGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

258

Amino Acids

29.94

Weight (kDa)

6.46

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168241 RchiOBHm_Chr2g0173731 RchiOBHm_Chr4g0425601
rosa_laevigata	RLG00000015228
rosa_roxburghii	Rroxscaffold_1G00029220 Rroxscaffold_5G00350310
rosa_rugosa	Rorug01G0170700 Rorug01G0170700 Rorug03G0218300
rosa_samantha	Rh2BG662000 Rh2DG677200 Rh6BG031600 Rh7BG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	90, 749
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	1 cut(s)	733
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	149, 450, 520, 563
AjiI	CACGTC	1 cut(s)	129
AluBI	AGCT	4 cut(s)	89, 96, 445, 532
AluI	AGCT	4 cut(s)	89, 96, 445, 532
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	250, 613
ApoI	RAATTY	1 cut(s)	234
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	328, 358
BbvI	GCAGC	2 cut(s)	237, 600
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	3 cut(s)	198, 251, 614
BlsI	GCNGC	3 cut(s)	199, 252, 615
BmgBI	CACGTC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	275, 447
BsaBI	GATNNNNATC	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	708
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	237, 600
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	260
BssMI	GATC	1 cut(s)	709
Bst6I	CTCTTC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	98, 595
BstDEI	CTNAG	2 cut(s)	305, 647
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	4 cut(s)	250, 299, 308, 349
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	237, 600
BsuRI	GGCC	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	98, 595
CfoI	GCGC	1 cut(s)	304
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	2 cut(s)	371, 419
CviJI	RGCY	9 cut(s)	89, 96, 197, 260, 352, 360, 445, 532, 769
CviKI_1	RGCY	9 cut(s)	89, 96, 197, 260, 352, 360, 445, 532, 769
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	2 cut(s)	305, 647
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	90, 749
EcoNI	CCTNNNNNAGG	1 cut(s)	731
FaeI	CATG	2 cut(s)	374, 422
FatI	CATG	2 cut(s)	370, 418
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	198, 251, 614
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	198, 251, 614
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	198, 251, 614
GsuI	CTGGAG	2 cut(s)	275, 447
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	260
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	374, 422
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	2 cut(s)	443, 530
HinfI	GANTC	1 cut(s)	665
HphI	GGTGA	2 cut(s)	328, 358
Hpy166II	GTNNAC	2 cut(s)	132, 526
Hpy188I	TCNGA	2 cut(s)	190, 557
Hpy188III	TCNNGA	4 cut(s)	434, 464, 563, 752
Hpy8I	GTNNAC	2 cut(s)	132, 526
HpyAV	CCTTC	2 cut(s)	4, 724
HpyCH4IV	ACGT	4 cut(s)	117, 128, 151, 275
HpyCH4V	TGCA	3 cut(s)	121, 244, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	250, 299, 308, 349
HpyF3I	CTNAG	2 cut(s)	305, 647
HpySE526I	ACGT	4 cut(s)	117, 128, 151, 275
Hsp92II	CATG	2 cut(s)	374, 422
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	1 cut(s)	709
LpnPI	CCDG	6 cut(s)	107, 239, 477, 488, 493, 740
Lsp1109I	GCAGC	2 cut(s)	237, 600
MaeII	ACGT	4 cut(s)	117, 128, 151, 275
MaeIII	GTNAC	3 cut(s)	364, 674, 752
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	5 cut(s)	16, 19, 83, 299, 417
MfeI	CAATTG	2 cut(s)	144, 245
MluCI	AATT	7 cut(s)	144, 202, 234, 245, 411, 744, 757
MlyI	GAGTC	1 cut(s)	674
MnlI	CCTC	7 cut(s)	250, 271, 348, 389, 401, 471, 727
MseI	TTAA	2 cut(s)	354, 536
MunI	CAATTG	2 cut(s)	144, 245
MwoI	GCNNNNNNNGC	4 cut(s)	250, 299, 308, 349
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	2 cut(s)	374, 422
NmuCI	GTSAC	2 cut(s)	364, 752
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PkrI	GCNGC	3 cut(s)	199, 252, 615
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
PsiI	TTATAA	1 cut(s)	689
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SaqAI	TTAA	2 cut(s)	354, 536
SatI	GCNGC	3 cut(s)	198, 251, 614
Sau3AI	GATC	1 cut(s)	709
SchI	GAGTC	1 cut(s)	674
SfcI	CTRYAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	144, 202, 234, 245, 411, 744, 757
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	260
TaiI	ACGT	4 cut(s)	120, 131, 154, 278
TasI	AATT	7 cut(s)	144, 202, 234, 245, 411, 744, 757
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	354, 536
Tru9I	TTAA	2 cut(s)	354, 536
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	364, 752
TseI	GCWGC	2 cut(s)	250, 613
Tsp45I	GTSAC	2 cut(s)	364, 752
TspDTI	ATGAA	5 cut(s)	17, 171, 335, 492, 706
TspRI	CASTG	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.