Rh6BG031600

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017424
Physical Location & Seq
Forward (+)
4784429 .. 4787205
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG031600.1

Sequence Viewer

Length: 420 bp
ATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCCGAAGTCAATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCAATCATGGCCGGCTTCAGCTGATATCTTCAATGCATTTGCTGTTGCAATTGCTGCTGGAGGCCTTACAATACAAGACGTTTGTTTGTGAAGAAGCAGACAAGGCGCTAAGAGCAGTGGTGAAGTATTTGACTACTCTGCCTCTACTTCACAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGAAGCTATAAGAAGCAGAAGAGGAATCAGTCATGGAACAAGAAATCAAGATTCAACAATACCAGCTCATAAAAAGAAGAAAAAGGTCAAGCTTTCAGGGAAGTTGCCTTCAGAAATAAGATATGAAACAGCGTCCTGCAGATATGTGTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

139

Amino Acids

15.98

Weight (kDa)

9.77

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 2 cut(s) 77, 357
AgsI TTSAA 2 cut(s) 108, 318
AluBI AGCT 4 cut(s) 97, 269, 329, 355
AluI AGCT 4 cut(s) 97, 269, 329, 355
AoxI GGCC 2 cut(s) 85, 138
ApeKI GCWGC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 208, 238
BbvI GCAGC 1 cut(s) 117
BclI TGATCA 2 cut(s) 24, 67
BfmI CTRYAG 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 11, 54
Bse118I RCCGGY 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 11, 54
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 2 cut(s) 87, 140
BsiSI CCGG 1 cut(s) 88
BsnI GGCC 2 cut(s) 87, 140
Bsp143I GATC 2 cut(s) 24, 67
BspANI GGCC 2 cut(s) 87, 140
BspMAI CTGCAG 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 11, 54
BssMI GATC 2 cut(s) 24, 67
BssT1I CCWWGG 2 cut(s) 11, 54
Bst6I CTCTTC 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 2 cut(s) 27, 70
BstMBI GATC 2 cut(s) 24, 67
BstMWI GCNNNNNNNGC 3 cut(s) 130, 179, 188
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 87, 140
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 87
CseI GACGC 1 cut(s) 384
CviAII CATG 3 cut(s) 83, 251, 296
CviJI RGCY 9 cut(s) 87, 91, 97, 140, 232, 240, 269, 329, 355
CviKI_1 RGCY 9 cut(s) 87, 91, 97, 140, 232, 240, 269, 329, 355
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 26, 69
DpnII GATC 2 cut(s) 24, 67
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 11, 54
Eco147I AGGCCT 1 cut(s) 140
Eco32I GATATC 1 cut(s) 102
Eco57I CTGAAG 2 cut(s) 77, 357
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 11, 54
EcoT22I ATGCAT 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 11, 54
FaeI CATG 3 cut(s) 86, 254, 299
FaiI YATR 8 cut(s) 84, 243, 252, 272, 297, 333, 387, 408
FatI CATG 3 cut(s) 82, 250, 295
FbaI TGATCA 2 cut(s) 24, 67
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 2 cut(s) 87, 140
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 86, 254, 299
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 4 cut(s) 7, 50, 288, 314
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 208, 238
Hpy188I TCNGA 4 cut(s) 24, 37, 67, 376
Hpy188III TCNNGA 3 cut(s) 28, 71, 311
HpyAV CCTTC 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 112, 124, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 179, 188
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 3 cut(s) 86, 254, 299
HspAI GCGC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Ksp22I TGATCA 2 cut(s) 24, 67
Kzo9I GATC 2 cut(s) 24, 67
LpnPI CCDG 6 cut(s) 101, 119, 214, 339, 345, 412
Lsp1109I GCAGC 1 cut(s) 117
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 26, 69
MboI GATC 2 cut(s) 24, 67
MboII GAAGA 6 cut(s) 16, 59, 96, 179, 294, 352
MfeI CAATTG 1 cut(s) 125
MluCI AATT 1 cut(s) 125
MnlI CCTC 6 cut(s) 43, 86, 130, 228, 269, 278
Mph1103I ATGCAT 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 130, 179, 188
NaeI GCCGGC 1 cut(s) 89
NdeII GATC 2 cut(s) 24, 67
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 86, 254, 299
NmuCI GTSAC 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 114
PceI AGGCCT 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 7, 50, 288, 314
PkrI GCNGC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 2 cut(s) 24, 67
SetI ASST 9 cut(s) 35, 78, 99, 158, 261, 271, 331, 351, 357
SfcI CTRYAG 1 cut(s) 400
Sse9I AATT 1 cut(s) 125
SseBI AGGCCT 1 cut(s) 140
StuI AGGCCT 1 cut(s) 140
StyI CCWWGG 2 cut(s) 11, 54
TaiI ACGT 1 cut(s) 158
TasI AATT 1 cut(s) 125
TfiI GAWTC 4 cut(s) 7, 50, 288, 314
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 17, 60, 402
TspRI CASTG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.