Rh7BG234100

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017424
Physical Location & Seq
Forward (+)
20471678 .. 20472531
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG234100.1

Sequence Viewer

Length: 411 bp
ATGCAACTTCTAAACAATGCTAGGCGTTTTGCTCTGTTTCACTCTGCTCTTTTGGTTCCAACTCTGCAGAAAGTGATAGTGGTATTGGTTAAGTCAATGAAGAATCCAAGGACTGCTCTTATCAAGACCTCCGAAGTCAATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCAATCATGGCCGGCTTCAGCTGATATCTTCAATGCCTTTGGTGACAGTTCGCTCGACTCCACCACCCCTGATGCATTTGACCAATTGGTGTGTATCCAATCGTGTTGTACTACTTCTCAATTTTGATCATCATATTAACAGCTTGGATTGCATGATGGGTTTTTGCAACTGTTGCAATTGCTGCTGGAGGCCTCACAATACAAGACGTTTGTTTGTGAAGAAGCAGACAAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

136

Amino Acids

15.68

Weight (kDa)

9.53

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 282
AgsI TTSAA 1 cut(s) 204
AluBI AGCT 2 cut(s) 193, 315
AluI AGCT 2 cut(s) 193, 315
AoxI GGCC 2 cut(s) 181, 362
ApeKI GCWGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 226
BbvI GCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 322
BciVI GTATCC 1 cut(s) 277
BclI TGATCA 2 cut(s) 163, 298
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 107, 150
Bse118I RCCGGY 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 107, 150
BseXI GCAGC 1 cut(s) 341
BshFI GGCC 2 cut(s) 183, 364
BsiSI CCGG 1 cut(s) 184
BsnI GGCC 2 cut(s) 183, 364
Bsp143I GATC 2 cut(s) 163, 298
BspANI GGCC 2 cut(s) 183, 364
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 107, 150
BssMI GATC 2 cut(s) 163, 298
BssT1I CCWWGG 2 cut(s) 107, 150
Bst4CI ACNGT 2 cut(s) 220, 344
BstAPI GCANNNNNTGC 2 cut(s) 345, 354
BstC8I GCNNGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 166, 301
BstMBI GATC 2 cut(s) 163, 298
BstMWI GCNNNNNNNGC 4 cut(s) 321, 345, 354, 403
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 341
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 183, 364
Cac8I GCNNGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 183
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 179, 325
CviJI RGCY 5 cut(s) 183, 187, 193, 315, 364
CviKI_1 RGCY 5 cut(s) 183, 187, 193, 315, 364
CviQI GTAC 1 cut(s) 281
DpnI GATC 2 cut(s) 165, 300
DpnII GATC 2 cut(s) 163, 298
EaeI YGGCCR 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 107, 150
Eco147I AGGCCT 1 cut(s) 364
Eco32I GATATC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 173
EcoRV GATATC 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 107, 150
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 107, 150
FaeI CATG 2 cut(s) 182, 328
FaiI YATR 3 cut(s) 180, 306, 326
FatI CATG 2 cut(s) 178, 324
FbaI TGATCA 2 cut(s) 163, 298
Fnu4HI GCNGC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 2 cut(s) 183, 364
HapII CCGG 1 cut(s) 184
Hin1II CATG 2 cut(s) 182, 328
HinfI GANTC 3 cut(s) 103, 146, 229
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 133, 163
Hpy188III TCNNGA 2 cut(s) 124, 167
HpyCH4III ACNGT 2 cut(s) 220, 344
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 6 cut(s) 4, 67, 247, 324, 339, 348
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 345, 354, 403
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 182, 328
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
Ksp22I TGATCA 2 cut(s) 163, 298
Kzo9I GATC 2 cut(s) 163, 298
LpnPI CCDG 3 cut(s) 197, 254, 343
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 165, 300
MboI GATC 2 cut(s) 163, 298
MboII GAAGA 4 cut(s) 112, 155, 192, 403
MfeI CAATTG 2 cut(s) 256, 349
MluCI AATT 3 cut(s) 256, 292, 349
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 139, 182, 354, 375
Mph1103I ATGCAT 1 cut(s) 249
MroNI GCCGGC 1 cut(s) 183
MseI TTAA 2 cut(s) 90, 309
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 184
MunI CAATTG 2 cut(s) 256, 349
MwoI GCNNNNNNNGC 4 cut(s) 321, 345, 354, 403
NaeI GCCGGC 1 cut(s) 185
NdeII GATC 2 cut(s) 163, 298
NgoMIV GCCGGC 1 cut(s) 183
NlaIII CATG 2 cut(s) 182, 328
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 249
PceI AGGCCT 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 103, 146
PkrI GCNGC 1 cut(s) 356
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 90, 309
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 163, 298
SchI GAGTC 1 cut(s) 223
SetI ASST 5 cut(s) 131, 174, 195, 317, 382
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 65
Sse9I AATT 3 cut(s) 256, 292, 349
SseBI AGGCCT 1 cut(s) 364
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 364
StyI CCWWGG 2 cut(s) 107, 150
TaaI ACNGT 2 cut(s) 220, 344
TaiI ACGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 256, 292, 349
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 2 cut(s) 103, 146
Tru1I TTAA 2 cut(s) 90, 309
Tru9I TTAA 2 cut(s) 90, 309
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 113, 156
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.