RchiOBHm_Chr3g0455301

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
5076313 .. 5076695
383 bp
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UTR
Exon/CDS
Intron
PRQ42224

Sequence Viewer

Length: 288 bp
ATGATGCTCGCCTCGAAAATCCCAACAACTCCCCCAATCAATTTTTCAAGGTTTGCTCATCTATGGAATCTGGGTTATGGACTTTTGTGGACATGGCCAGTGACTGAGTTGAGTTGTCGGCGTGGGGCATGTATGGCGCATTGCTTCTTGGAGGTAGAGGAGAAATCTGGTTTTAATGGTGAAGGCGAATTGGATTCTGGTTTTGATGATTTGGGTGGCGAAGGTGAAGTGAAATATGGTTTTAATGGTTTGGGTGGTGGTGGGGATGCCTCTGGAGAGTACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.31

Weight (kDa)

4.69

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 191, 236
BalI TGGCCA 1 cut(s) 97
BmsI GCATC 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 139
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 97
BsnI GGCC 1 cut(s) 97
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 9
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 93, 129
CviJI RGCY 1 cut(s) 97
CviKI_1 RGCY 1 cut(s) 97
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 95
FaeI CATG 2 cut(s) 96, 132
FaiI YATR 6 cut(s) 64, 78, 94, 130, 134, 237
FatI CATG 2 cut(s) 92, 128
FokI GGATG 1 cut(s) 278
GlaI GCGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 97
HhaI GCGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 96, 132
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 67, 194
HphI GGTGA 2 cut(s) 191, 236
Hpy166II GTNNAC 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 176, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 2 cut(s) 96, 132
HspAI GCGC 1 cut(s) 137
LpnPI CCDG 5 cut(s) 56, 111, 153, 183, 258
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 2 cut(s) 40, 188
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 22, 145, 151, 280
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 2 cut(s) 174, 243
Msp20I TGGCCA 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 96, 132
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 132
PfeI GAWTC 2 cut(s) 67, 194
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 174, 243
SetI ASST 3 cut(s) 53, 156, 226
SfaNI GCATC 1 cut(s) 256
Sse9I AATT 2 cut(s) 40, 188
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 40, 188
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 67, 194
Tru1I TTAA 2 cut(s) 174, 243
Tru9I TTAA 2 cut(s) 174, 243
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspRI CASTG 1 cut(s) 105
XceI RCATGY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.