Rroxscaffold_2G00088600

Histone acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015719
Physical Location & Seq
Forward (+)
10526190 .. 10527294
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088600.1

Sequence Viewer

Length: 846 bp
ATGCTATTTTCCTCGTCTCTCTTCCTCGGTTCCTCCTCCTCTTCTTCTTCTTTTTCTTTTTCTTCTCACTTCGCCGTCTCCACCCATTCAAGGAGCTCACAGTCCCCGTCGCCATCCCACTTGGCCTCCACCTCTACTACCTCCTCCATCCACAAGCGCAAGCTCGCATCTAAGGACCACGCGCCTCCCTTCCCTCCCTCATCCTTCTCCGCTGCCATGCTCGACGACGCTCTGACCTCCAGCGACGACCTCGAAACCATCTCAGCACGCGGCAGCGGCCCCGATTCCGACTCATACAATCCATTCCTAAACTTCAAGTTCGAGTTTGTCTTCAGTGGAGAAGACGTGGAGGAGGGTGGTGGTGTAGGCAGCCATGGTTGTAAAGCACAAGAAGACAAAGACGAAGATGATGAAGATGAAGGTCTCAGATTCGAGCAGCCCCATTTGGCCTTCCACCGACGGGATACCGGCCTCAAAAACTCCCTCAATCAATTTTCCAAGGTTTGCTCAGCTATGGAATTTGGGTTCAGATCACTAAGTATCAGAATTCTTATTTGTGAAGTGAAATCTGGTTTTATGGTTTGGGTGGTGGGGGGATGCCTCTGGAGAGTACAGGGAGTGGGTTTGGGGAGATTGGGAGATGAGGGAGAGGAGAGAGTGTGTAGTCGGAGACTGGTTTTGATGGTAAAGAGATTGAGAGCGGGAAGTGAGGTAGGAGAGGAGGGTTGTGTTGCGCTCATGGTGGCGGTTGAGCGGAGCTGCGAAGGGATTCGTGTAACCCCAAAGGGGGTTGTGGGATGTAGGAGAGGAGGAGGGAGGAGAGAGGAGAGGATCAGAGGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010015 GO:0010321 GO:0010468 GO:0010484 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0061733 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04330 ko04919 ko05166 ko05203 map04330 map04919 map05166 map05203
Pfam Domains
Protein Families
Acetyltransf_1 Bromodomain

Protein Analysis

281

Amino Acids

30.4

Weight (kDa)

6.26

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 701, 754
AccII CGCG 2 cut(s) 182, 270
AciI CCGC 6 cut(s) 210, 270, 276, 701, 746, 754
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 2 cut(s) 518, 546
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 4 cut(s) 90, 460, 786, 787
AgsI TTSAA 2 cut(s) 90, 316
AjiI CACGTC 1 cut(s) 346
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 4 cut(s) 96, 163, 512, 759
AluI AGCT 4 cut(s) 96, 163, 512, 759
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 4 cut(s) 21, 82, 428, 664
AlwI GGATC 1 cut(s) 839
AoxI GGCC 4 cut(s) 123, 277, 447, 469
ApeKI GCWGC 5 cut(s) 212, 273, 369, 436, 759
ApoI RAATTY 2 cut(s) 518, 546
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 3 cut(s) 159, 184, 736
AspS9I GGNCC 2 cut(s) 175, 278
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 3 cut(s) 322, 348, 399
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 5 cut(s) 199, 285, 381, 448, 746
BccI CCATC 4 cut(s) 121, 155, 266, 676
BceAI ACGGC 1 cut(s) 59
BciVI GTATCC 1 cut(s) 457
BcoDI GTCTC 4 cut(s) 21, 82, 428, 664
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 7 cut(s) 213, 271, 274, 277, 370, 437, 760
BlpI GCTNAGC 1 cut(s) 508
BlsI GCNGC 7 cut(s) 214, 272, 275, 278, 371, 438, 761
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 175, 278
BmiI GGNNCC 2 cut(s) 31, 280
BmsI GCATC 2 cut(s) 176, 587
BpiI GAAGAC 3 cut(s) 322, 348, 399
BpmI CTGGAG 2 cut(s) 223, 625
Bpu1102I GCTNAGC 1 cut(s) 508
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 25, 373, 498
BsaXI ACNNNNNCTCC 6 cut(s) 110, 140, 330, 360, 644, 674
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 460, 786, 787
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 678
BseDI CCNNGG 3 cut(s) 25, 373, 498
BseGI GGATG 5 cut(s) 113, 147, 200, 602, 803
BseLI CCNNNNNNNGG 4 cut(s) 90, 460, 786, 787
BseMII CTCAG 3 cut(s) 276, 439, 522
BseNI ACTGG 1 cut(s) 678
BseXI GCAGC 5 cut(s) 199, 285, 381, 448, 746
Bsh1236I CGCG 2 cut(s) 182, 270
BshFI GGCC 4 cut(s) 125, 279, 449, 471
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 4 cut(s) 90, 460, 786, 787
BsmAI GTCTC 4 cut(s) 21, 82, 428, 664
BsmBI CGTCTC 2 cut(s) 21, 82
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 4 cut(s) 125, 279, 449, 471
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 530, 831
Bsp1720I GCTNAGC 1 cut(s) 508
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 6 cut(s) 210, 270, 276, 701, 746, 754
BspANI GGCC 4 cut(s) 125, 279, 449, 471
BspCNI CTCAG 3 cut(s) 275, 438, 521
BspFNI CGCG 2 cut(s) 182, 270
BspLI GGNNCC 2 cut(s) 31, 280
BspPI GGATC 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 428
BsrBI CCGCTC 2 cut(s) 701, 754
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 678
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 25, 373, 498
BssMI GATC 2 cut(s) 530, 831
BssT1I CCWWGG 2 cut(s) 373, 498
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 26, 46
BstC8I GCNNGC 3 cut(s) 161, 165, 268
BstDEI CTNAG 5 cut(s) 171, 262, 425, 508, 536
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 5 cut(s) 113, 147, 200, 602, 803
BstFNI CGCG 2 cut(s) 182, 270
BstHHI GCGC 3 cut(s) 159, 184, 736
BstKTI GATC 2 cut(s) 533, 834
BstMAI GTCTC 4 cut(s) 21, 82, 428, 664
BstMBI GATC 2 cut(s) 530, 831
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstUI CGCG 2 cut(s) 182, 270
BstV1I GCAGC 5 cut(s) 199, 285, 381, 448, 746
BstV2I GAAGAC 3 cut(s) 322, 348, 399
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 4 cut(s) 125, 279, 449, 471
BtgI CCRYGG 1 cut(s) 373
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 5 cut(s) 113, 147, 200, 602, 803
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 161, 165, 268
CfoI GCGC 3 cut(s) 159, 184, 736
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 175, 278
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 611
CviAII CATG 3 cut(s) 217, 374, 739
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 5 cut(s) 171, 262, 425, 508, 536
DpnI GATC 2 cut(s) 532, 833
DpnII GATC 2 cut(s) 530, 831
Eam1104I CTCTTC 2 cut(s) 26, 46
EarI CTCTTC 2 cut(s) 26, 46
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 373, 498
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 373, 498
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 2 cut(s) 373, 498
Esp3I CGTCTC 2 cut(s) 21, 82
FaeI CATG 3 cut(s) 220, 377, 742
FaiI YATR 6 cut(s) 218, 295, 375, 515, 578, 740
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 216, 373, 738
FauI CCCGC 1 cut(s) 694
Fnu4HI GCNGC 7 cut(s) 213, 271, 274, 277, 370, 437, 760
FokI GGATG 5 cut(s) 100, 134, 187, 609, 810
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 7 cut(s) 213, 271, 274, 277, 370, 437, 760
GlaI GCGC 3 cut(s) 158, 183, 735
GluI GCNGC 7 cut(s) 213, 271, 274, 277, 370, 437, 760
GsuI CTGGAG 2 cut(s) 223, 625
HaeIII GGCC 4 cut(s) 125, 279, 449, 471
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 236
HhaI GCGC 3 cut(s) 159, 184, 736
Hin1II CATG 3 cut(s) 220, 377, 742
Hin6I GCGC 3 cut(s) 157, 182, 734
HinP1I GCGC 3 cut(s) 157, 182, 734
HinfI GANTC 4 cut(s) 284, 290, 429, 769
HpaII CCGG 1 cut(s) 468
Hpy188I TCNGA 7 cut(s) 234, 289, 428, 530, 545, 669, 836
Hpy188III TCNNGA 1 cut(s) 604
Hpy99I CGWCG 5 cut(s) 112, 227, 230, 248, 462
HpyAV CCTTC 5 cut(s) 199, 214, 413, 460, 758
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 5 cut(s) 171, 262, 425, 508, 536
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 3 cut(s) 220, 377, 742
HspAI GCGC 3 cut(s) 157, 182, 734
Kzo9I GATC 2 cut(s) 530, 831
LmnI GCTCC 2 cut(s) 93, 756
LpnPI CCDG 6 cut(s) 253, 481, 555, 589, 599, 659
Lsp1109I GCAGC 5 cut(s) 199, 285, 381, 448, 746
LweI GCATC 2 cut(s) 176, 587
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 775
MalI GATC 2 cut(s) 532, 833
MbiI CCGCTC 2 cut(s) 701, 754
MboI GATC 2 cut(s) 530, 831
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 3 cut(s) 491, 518, 546
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 312, 647
MroXI GAANNNNTTC 1 cut(s) 768
MspA1I CMGCKG 2 cut(s) 212, 276
MspI CCGG 1 cut(s) 468
MvnI CGCG 2 cut(s) 182, 270
MwoI GCNNNNNNNGC 1 cut(s) 276
NcoI CCATGG 1 cut(s) 373
NdeII GATC 2 cut(s) 530, 831
NlaIII CATG 3 cut(s) 220, 377, 742
NlaIV GGNNCC 2 cut(s) 31, 280
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 284, 429, 769
PkrI GCNGC 7 cut(s) 214, 272, 275, 278, 371, 438, 761
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 31, 280
PspPI GGNCC 2 cut(s) 175, 278
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 7 cut(s) 213, 271, 274, 277, 370, 437, 760
Sau3AI GATC 2 cut(s) 530, 831
Sau96I GGNCC 2 cut(s) 175, 278
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 2 cut(s) 176, 587
SinI GGWCC 1 cut(s) 175
Sse9I AATT 3 cut(s) 491, 518, 546
SsiI CCGC 6 cut(s) 210, 270, 276, 701, 746, 754
SstI GAGCTC 1 cut(s) 98
StyI CCWWGG 2 cut(s) 373, 498
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 348
TaqI TCGA 4 cut(s) 222, 252, 321, 432
TasI AATT 3 cut(s) 491, 518, 546
TatI WGTACW 1 cut(s) 610
TauI GCSGC 2 cut(s) 273, 279
TfiI GAWTC 3 cut(s) 284, 429, 769
TscAI CASTG 1 cut(s) 340
TseI GCWGC 5 cut(s) 212, 273, 369, 436, 759
TspDTI ATGAA 2 cut(s) 426, 432
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 2 cut(s) 518, 546
XmnI GAANNNNTTC 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.