Rh6BG089500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015719
Physical Location & Seq
Reverse (-)
14038506 .. 14038733
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG089500.1

Sequence Viewer

Length: 228 bp
ATGCGCGACAGCGCTCTGACCTCCAGCGATGACCTCGAAAGCATCTCAGCACGAGACGGCAGCGACGATTCCGACTCATACAATCCATTCCCAAACTTCAAGTTCGAGTTTGTCTTCAGTGGAGACGACGCGGCGGAGACGATGTGGAGGAGGTGGGTTCTGGCGAGCTGGGCATGGGCCAGGCCCTATTCGGTGAGCAAAATTTTGTTGTCCGGGGTGGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

4.32

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 6, 131
AciI CCGC 2 cut(s) 131, 134
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 100
AfeI AGCGCT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 3 cut(s) 48, 117, 131
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 177, 182
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 2 cut(s) 6, 14
AspS9I GGNCC 2 cut(s) 177, 183
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 205
BauI CACGAG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 181
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 48, 117, 131
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 2 cut(s) 61, 132
BlsI GCNGC 2 cut(s) 62, 133
Bme1390I CCNGG 2 cut(s) 181, 214
BmgT120I GGNCC 2 cut(s) 177, 183
BmrFI CCNGG 2 cut(s) 181, 214
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 2 cut(s) 6, 131
BshFI GGCC 2 cut(s) 179, 184
BsiSI CCGG 1 cut(s) 213
BsmAI GTCTC 3 cut(s) 48, 117, 131
BsmBI CGTCTC 3 cut(s) 48, 117, 131
BsnI GGCC 2 cut(s) 179, 184
BspACI CCGC 2 cut(s) 131, 134
BspANI GGCC 2 cut(s) 179, 184
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 2 cut(s) 6, 131
BssECI CCNNGG 1 cut(s) 213
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 46
BstFNI CGCG 2 cut(s) 6, 131
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 6, 14
BstMAI GTCTC 3 cut(s) 48, 117, 131
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 179, 212
BstUI CGCG 2 cut(s) 6, 131
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 179, 184
BtgZI GCGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 2 cut(s) 6, 14
Cfr13I GGNCC 2 cut(s) 177, 183
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 168, 179, 184
CviKI_1 RGCY 3 cut(s) 168, 179, 184
DdeI CTNAG 1 cut(s) 46
EciI GGCGGA 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 179
Esp3I CGTCTC 3 cut(s) 48, 117, 131
FaeI CATG 1 cut(s) 177
FaiI YATR 2 cut(s) 79, 175
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 61, 132
Fsp4HI GCNGC 2 cut(s) 61, 132
GlaI GCGC 2 cut(s) 5, 13
GluI GCNGC 2 cut(s) 61, 132
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 7
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 179, 184
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 6, 14
Hin1II CATG 1 cut(s) 177
Hin6I GCGC 2 cut(s) 4, 12
HinP1I GCGC 2 cut(s) 4, 12
HinfI GANTC 2 cut(s) 68, 74
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 18, 73
Hpy99I CGWCG 2 cut(s) 68, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 1 cut(s) 177
HspAI GCGC 2 cut(s) 4, 12
LpnPI CCDG 5 cut(s) 37, 146, 154, 166, 193
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 106
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 4 cut(s) 31, 44, 141, 144
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 181, 214
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 2 cut(s) 6, 131
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 214
NlaIII CATG 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 62, 133
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 179
PspPI GGNCC 2 cut(s) 177, 183
SatI GCNGC 2 cut(s) 61, 132
Sau96I GGNCC 2 cut(s) 177, 183
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 181, 214
SetI ASST 4 cut(s) 23, 36, 155, 170
SfaNI GCATC 1 cut(s) 51
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 131, 134
StyD4I CCNGG 2 cut(s) 179, 212
TaqI TCGA 2 cut(s) 36, 105
TasI AATT 1 cut(s) 201
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 60
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.