Rroxscaffold_1G00020960

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
25565339 .. 25565775
437 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00020960.1

Sequence Viewer

Length: 192 bp
ATGGGCCGTGCCCGTTCGGTGAGCGGGATTTTGTTGTCCGGGGTGGTGGTGTTTGCTCAGCTATGGAATGCGGGTTTCGGACTTTTGTGGACATGGCCGTGGGCTGAGTTGAGTTGCCAGCATGTACATGTACAGCGCGTTGCTTCTTGGAGGAAGAGGAGAAATCTGGTTTTATTGGTGAAGGCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.17

Weight (kDa)

12.0

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 24, 71
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 2 cut(s) 126, 132
AflIII ACRYGT 1 cut(s) 127
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AoxI GGCC 2 cut(s) 4, 95
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 31, 190
BaeGI GKGCMC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 40
Bpu1102I GCTNAGC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 39, 98
BseDI CCNNGG 2 cut(s) 39, 98
BseMII CTCAG 2 cut(s) 71, 96
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 6, 97
BsiSI CCGG 1 cut(s) 39
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 6, 97
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 2 cut(s) 124, 130
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 2 cut(s) 24, 71
BspANI GGCC 2 cut(s) 6, 97
BspCNI CTCAG 2 cut(s) 70, 97
BspFNI CGCG 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 24
BsrGI TGTACA 2 cut(s) 124, 130
BssECI CCNNGG 2 cut(s) 39, 98
Bst6I CTCTTC 1 cut(s) 149
BstAUI TGTACA 2 cut(s) 124, 130
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 57, 105
BstDSI CCRYGG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstNSI RCATGY 2 cut(s) 125, 131
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 6, 97
BtgI CCRYGG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 125, 131
CviAII CATG 3 cut(s) 93, 122, 128
CviJI RGCY 4 cut(s) 6, 61, 97, 104
CviKI_1 RGCY 4 cut(s) 6, 61, 97, 104
CviQI GTAC 2 cut(s) 125, 131
DdeI CTNAG 2 cut(s) 57, 105
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
FaeI CATG 3 cut(s) 96, 125, 131
FaiI YATR 4 cut(s) 64, 94, 123, 129
FatI CATG 3 cut(s) 92, 121, 127
FauI CCCGC 2 cut(s) 17, 64
GlaI GCGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 6, 97
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 96, 125, 131
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 31, 190
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 57, 105
Hsp92II CATG 3 cut(s) 96, 125, 131
HspAI GCGC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 52, 131, 152
MbiI CCGCTC 1 cut(s) 24
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 187
MnlI CCTC 2 cut(s) 144, 150
MslI CAYNNNNRTG 2 cut(s) 97, 126
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 138
NciI CCSGG 1 cut(s) 40
NlaIII CATG 3 cut(s) 96, 125, 131
NspI RCATGY 2 cut(s) 125, 131
PciI ACATGT 1 cut(s) 127
PctI GAATGC 1 cut(s) 73
PscI ACATGT 1 cut(s) 127
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 126, 132
RsaNI GTAC 2 cut(s) 125, 131
RseI CAYNNNNRTG 2 cut(s) 97, 126
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 13
SetI ASST 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 97, 126
Sse9I AATT 1 cut(s) 187
SsiI CCGC 2 cut(s) 24, 71
StyD4I CCNGG 1 cut(s) 38
TasI AATT 1 cut(s) 187
TatI WGTACW 2 cut(s) 124, 130
XceI RCATGY 2 cut(s) 125, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.