Rh3AG065800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015719
Physical Location & Seq
Forward (+)
4597793 .. 4598527
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG065800.1

Sequence Viewer

Length: 429 bp
ATGATCAACTTCTTCTCTTCTCTCCTACACCTGAAAATTGCTGAATCTTGTTCTCTTATCCGAGACCAGGACCATCCGATCTGTGTGGTTGGAATCGTTGTAGGCGGAAATGATGCAGCAGAGAAGTCGCAGCAGAGACGACGCAGAGGAGTTGGTTTCCAGCAAGCTGGGCATGGGCCAAGCCCTGTTCTGTTTGCTCAGCTATGGAATCTGGGTTATGGACTTTTGTGGACATGGCCAGTGACTGAGTTGAGTTGTTGGCTTAGGGCGTGTACGGCGCATTGCTTCTTGGAGGTAGAGGAGAAATCTGGTTTTAATGGTGAAGGCGAATTGAATTCTGGTTTTGATGATTTGGGTGGCGAAGGTGAAGTGAAATATGGTTTTGATAGTTTGGGTGGTGGTGGGGATGCCTCTGGAGAGTATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.43

Weight (kDa)

4.97

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 167, 202
AluI AGCT 2 cut(s) 167, 202
Alw26I GTCTC 2 cut(s) 57, 130
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 176, 236
ApeKI GCWGC 2 cut(s) 116, 130
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 70, 176
AsuHPI GGTGA 2 cut(s) 332, 377
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 238
BbvI GCAGC 2 cut(s) 128, 142
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 57, 130
BisI GCNGC 2 cut(s) 117, 131
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 118, 132
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 176
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 103, 397
Bpu10I CCTNAGC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 73, 412
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 212, 237
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 2 cut(s) 162, 314
BseXI GCAGC 2 cut(s) 128, 142
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 2 cut(s) 178, 238
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 57, 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 178, 238
Bso31I GGTCTC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 3, 78
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 178, 238
BspCNI CTCAG 2 cut(s) 211, 238
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 239
BssMI GATC 2 cut(s) 3, 78
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 198, 246, 263
BstF5I GGATG 2 cut(s) 73, 412
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 6, 81
BstMAI GTCTC 2 cut(s) 57, 130
BstMBI GATC 2 cut(s) 3, 78
BstMWI GCNNNNNNNGC 2 cut(s) 169, 275
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 128, 142
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 2 cut(s) 178, 238
BtsCI GGATG 2 cut(s) 73, 412
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 70, 176
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 173, 234
CviJI RGCY 6 cut(s) 167, 178, 183, 202, 238, 262
CviKI_1 RGCY 6 cut(s) 167, 178, 183, 202, 238, 262
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 198, 246, 263
DpnI GATC 2 cut(s) 5, 80
DpnII GATC 2 cut(s) 3, 78
EaeI YGGCCR 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 176, 237
FaiI YATR 6 cut(s) 174, 205, 219, 235, 378, 423
FatI CATG 2 cut(s) 172, 233
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 117, 131
FokI GGATG 2 cut(s) 60, 419
Fsp4HI GCNGC 2 cut(s) 117, 131
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 117, 131
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 2 cut(s) 178, 238
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 176, 237
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 3 cut(s) 44, 93, 208
HphI GGTGA 2 cut(s) 332, 377
Hpy166II GTNNAC 2 cut(s) 231, 273
Hpy188I TCNGA 2 cut(s) 62, 78
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 2 cut(s) 231, 273
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 2 cut(s) 317, 356
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 275
HpyF3I CTNAG 3 cut(s) 198, 246, 263
Hsp92II CATG 2 cut(s) 176, 237
HspAI GCGC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 78
Lsp1109I GCAGC 2 cut(s) 128, 142
LweI GCATC 2 cut(s) 103, 397
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 5, 80
MboI GATC 2 cut(s) 3, 78
MboII GAAGA 2 cut(s) 4, 9
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 3 cut(s) 36, 329, 334
MluNI TGGCCA 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 140, 286, 292, 421
Mox20I TGGCCA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 169, 275
NdeII GATC 2 cut(s) 3, 78
NlaIII CATG 2 cut(s) 176, 237
NmuCI GTSAC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 44, 93, 208
PkrI GCNGC 2 cut(s) 118, 132
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 2 cut(s) 70, 176
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 117, 131
Sau3AI GATC 2 cut(s) 3, 78
Sau96I GGNCC 2 cut(s) 70, 176
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 33, 169, 204, 297, 367
SfaNI GCATC 2 cut(s) 103, 397
SinI GGWCC 1 cut(s) 70
Sse9I AATT 3 cut(s) 36, 329, 334
SsiI CCGC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 66
TasI AATT 3 cut(s) 36, 329, 334
TfiI GAWTC 3 cut(s) 44, 93, 208
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 116, 130
Tsp45I GTSAC 1 cut(s) 241
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.