Rh5AG399900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
69290416 .. 69290601
186 bp
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UTR
Exon/CDS
Intron
Rh5AG399900.1

Sequence Viewer

Length: 186 bp
ATGCTCGACGACGCTCTGACCTCCAGCGACCACCTCAAAACCATCTCAGCACGCGGCAACGGCCCCAATTCCGACTCATACAATCCATTCCTAAACTTCAAGTTCGAGTTTGTCTTCAGTGGAGATGACGTGGATGAGGTGGGTTCCGGCGAGCTGGGCATGGGCCAGGCCGTGTTCGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.59

Weight (kDa)

4.05

Isoelectric Point (pI)

4.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AoxI GGCC 3 cut(s) 61, 163, 168
AspS9I GGNCC 2 cut(s) 62, 163
BbsI GAAGAC 1 cut(s) 106
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 76, 155
BciT130I CCWGG 1 cut(s) 167
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 62, 163
BmiI GGNNCC 2 cut(s) 64, 145
BmrFI CCNGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 3 cut(s) 63, 165, 170
BsiSI CCGG 1 cut(s) 147
BsnI GGCC 3 cut(s) 63, 165, 170
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 63, 165, 170
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 64, 145
Bst2UI CCWGG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 52, 152
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 60, 156
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 63, 165, 170
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 52, 152
Cfr13I GGNCC 2 cut(s) 62, 163
CseI GACGC 1 cut(s) 20
CviAII CATG 1 cut(s) 160
CviJI RGCY 4 cut(s) 63, 154, 165, 170
CviKI_1 RGCY 4 cut(s) 63, 154, 165, 170
DdeI CTNAG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 79, 161
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 3 cut(s) 63, 165, 170
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 163
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 18, 73
Hpy99I CGWCG 2 cut(s) 11, 14
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 156
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 163
LpnPI CCDG 5 cut(s) 37, 140, 152, 160, 179
MaeII ACGT 1 cut(s) 129
MboII GAAGA 1 cut(s) 106
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 31, 44, 130
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 60, 156
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 64, 145
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 64, 145
PspPI GGNCC 2 cut(s) 62, 163
SatI GCNGC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 62, 163
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 167
SetI ASST 5 cut(s) 23, 36, 132, 141, 156
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 6, 105, 177
TasI AATT 1 cut(s) 67
TauI GCSGC 1 cut(s) 57
TscAI CASTG 1 cut(s) 124
TspRI CASTG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.