Rmu_sc0003712.1_g000012

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003712.1
OG0015719
Physical Location & Seq
Reverse (-)
66291 .. 69699
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003712.1_g000012.1.cds

Sequence Viewer

Length: 1203 bp
atgaagactaaaactgaagcaggttcctgcaagcggatgagcattcagatcgaggactccaaggacttgcagcaacagagcaaagccttcgataagctcactgaccgcgtcgaagatcgccaggtcgattcgacacgattccagaaggccctagcttccattgctgccaccttagaagtcgatttggaagctgtgagaaagagggagaaagaattgggtactgtgaagatcaatccacgcgatgttgagataattgccatcaatatgttgctgggtttgaattggaacagtgaggcaggaaaaggccctagcttccattgctgccaccttagaagtcgatttggaagctgtgagaaagagggagaaagaattgggtactgtgaagatcaatccacgcgatgttataaggaggttttgggtctttttgaggcgatgaaagtaatggagaatgtgagggttgatgcggtgacgatggtgaagtccccgtcgccatcccacttggcctccacctctactacctcctccatccacaagcgcaagctcgcatctaaggaccacgcgcctcccttccctccctcatccttctccgctgccatgttcgacgacgctctgacctccatcgacctcgaaaccatctcagcacacggcaatggccccgattccgactcatacaatccattcctaaacttcaagttcgagtttgtcttcagtggagacgacgtggaggagggtggtggtgtaggcagccatggttgtaaatcacaagaagacaaagacaaagatgatgaagatgaaggtctcaaattcaagcagccccatttggccttccaccaacgggataccggcctcaaaaactccctcaatcaatttttcaaggtggtggggggatgcctctggagagtacagagagtgggtttggggagattgggagatgagggagagaagagagtgtatagtcggagactggttttgatggtgaagagattgagagcgagaagtgaggtaggagaggagggtagtgttgtgctcatggtggcggttgagcggagctgcgaagggatttgtgtaaccccaaagggggttgtgggatgtaggagaggaggaaggaggagagaggagagaggagaggatcagaggaggagagaattttgtgatttggacgcggatgatgaaaaacagaacttcagggacgatcttgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

44.83

Weight (kDa)

6.21

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 1045
AccII CGCG 5 cut(s) 108, 240, 397, 560, 1163
AciI CCGC 7 cut(s) 34, 106, 464, 588, 1037, 1045, 1163
AclWI GGATC 1 cut(s) 1137
AcsI RAATTY 2 cut(s) 803, 1145
AcuI CTGAAG 3 cut(s) 36, 691, 1168
AfaI GTAC 3 cut(s) 220, 377, 903
AfiI CCNNNNNNNGG 4 cut(s) 33, 835, 1077, 1078
AgsI TTSAA 4 cut(s) 280, 691, 808, 874
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 7 cut(s) 97, 155, 191, 312, 348, 541, 1050
AluI AGCT 7 cut(s) 97, 155, 191, 312, 348, 541, 1050
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 3 cut(s) 708, 803, 955
AlwI GGATC 1 cut(s) 1137
AoxI GGCC 6 cut(s) 147, 304, 501, 652, 822, 844
ApeKI GCWGC 7 cut(s) 70, 164, 321, 590, 744, 811, 1050
ApoI RAATTY 2 cut(s) 803, 1145
AspLEI GCGC 2 cut(s) 537, 562
AspS9I GGNCC 4 cut(s) 148, 305, 553, 653
AsuHPI GGTGA 3 cut(s) 478, 487, 988
AvaII GGWCC 1 cut(s) 553
BbsI GAAGAC 3 cut(s) 11, 697, 774
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 7 cut(s) 82, 151, 308, 577, 756, 823, 1037
BccI CCATC 7 cut(s) 266, 466, 499, 533, 626, 641, 967
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 4 cut(s) 31, 65, 70, 104
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 708, 803, 955
BfaI CTAG 2 cut(s) 152, 309
BfuAI ACCTGC 1 cut(s) 11
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 7 cut(s) 71, 165, 322, 591, 745, 812, 1051
BlsI GCNGC 7 cut(s) 72, 166, 323, 592, 746, 813, 1052
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 4 cut(s) 148, 305, 553, 653
BmiI GGNNCC 2 cut(s) 25, 655
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 451, 554, 878
BpiI GAAGAC 3 cut(s) 11, 697, 774
BpmI CTGGAG 1 cut(s) 916
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 2 cut(s) 60, 748
BsaXI ACNNNNNCTCC 4 cut(s) 488, 518, 705, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 835, 1077, 1078
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 1 cut(s) 969
Bse3DI GCAATG 3 cut(s) 159, 316, 655
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 60, 748
BseGI GGATG 7 cut(s) 42, 491, 525, 578, 893, 1094, 1171
BseLI CCNNNNNNNGG 4 cut(s) 33, 835, 1077, 1078
BseMI GCAATG 3 cut(s) 159, 316, 655
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 1 cut(s) 969
BseRI GAGGAG 9 cut(s) 511, 740, 1025, 1113, 1123, 1130, 1137, 1150, 1153
BseXI GCAGC 7 cut(s) 82, 151, 308, 577, 756, 823, 1037
BseYI CCCAGC 1 cut(s) 271
Bsh1236I CGCG 5 cut(s) 108, 240, 397, 560, 1163
BshFI GGCC 6 cut(s) 149, 306, 503, 654, 824, 846
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 4 cut(s) 33, 835, 1077, 1078
BsmAI GTCTC 3 cut(s) 708, 803, 955
BsmBI CGTCTC 1 cut(s) 708
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 6 cut(s) 149, 306, 503, 654, 824, 846
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 1029
Bsp143I GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 7 cut(s) 34, 106, 464, 588, 1037, 1045, 1163
BspANI GGCC 6 cut(s) 149, 306, 503, 654, 824, 846
BspCNI CTCAG 1 cut(s) 650
BspFNI CGCG 5 cut(s) 108, 240, 397, 560, 1163
BspLI GGNNCC 2 cut(s) 25, 655
BspMI ACCTGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 1137
BspTNI GGTCTC 1 cut(s) 803
BsrBI CCGCTC 1 cut(s) 1045
BsrDI GCAATG 3 cut(s) 159, 316, 655
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 1 cut(s) 969
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 2 cut(s) 60, 748
BssMI GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
BssT1I CCWWGG 2 cut(s) 60, 748
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 223, 290, 380
Bst6I CTCTTC 2 cut(s) 938, 974
BstC8I GCNNGC 3 cut(s) 32, 539, 543
BstDEI CTNAG 4 cut(s) 172, 329, 549, 637
BstDSI CCRYGG 1 cut(s) 748
BstF5I GGATG 7 cut(s) 42, 491, 525, 578, 893, 1094, 1171
BstFNI CGCG 5 cut(s) 108, 240, 397, 560, 1163
BstHHI GCGC 2 cut(s) 537, 562
BstKTI GATC 6 cut(s) 51, 118, 231, 388, 1132, 1195
BstMAI GTCTC 3 cut(s) 708, 803, 955
BstMBI GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
BstMWI GCNNNNNNNGC 2 cut(s) 161, 318
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstUI CGCG 5 cut(s) 108, 240, 397, 560, 1163
BstV1I GCAGC 7 cut(s) 82, 151, 308, 577, 756, 823, 1037
BstV2I GAAGAC 3 cut(s) 11, 697, 774
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 6 cut(s) 149, 306, 503, 654, 824, 846
BtgI CCRYGG 1 cut(s) 748
BtgZI GCGATG 3 cut(s) 255, 412, 446
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 7 cut(s) 42, 491, 525, 578, 893, 1094, 1171
BtsIMutI CAGTG 3 cut(s) 99, 295, 715
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 3 cut(s) 32, 539, 543
CfoI GCGC 2 cut(s) 537, 562
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 4 cut(s) 148, 305, 553, 653
CseI GACGC 3 cut(s) 97, 614, 1169
Csp6I GTAC 3 cut(s) 219, 376, 902
CviAII CATG 3 cut(s) 595, 749, 1030
CviQI GTAC 3 cut(s) 219, 376, 902
DdeI CTNAG 4 cut(s) 172, 329, 549, 637
DpnI GATC 6 cut(s) 50, 117, 230, 387, 1131, 1194
DpnII GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
Eam1104I CTCTTC 2 cut(s) 938, 974
EarI CTCTTC 2 cut(s) 938, 974
Eco130I CCWWGG 2 cut(s) 60, 748
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 3 cut(s) 36, 691, 1168
EcoO109I RGGNCCY 2 cut(s) 148, 305
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 60, 748
ErhI CCWWGG 2 cut(s) 60, 748
Esp3I CGTCTC 1 cut(s) 708
FaeI CATG 3 cut(s) 598, 752, 1033
FaiI YATR 7 cut(s) 266, 405, 596, 670, 750, 954, 1031
FaqI GGGAC 1 cut(s) 466
FatI CATG 3 cut(s) 594, 748, 1029
Fnu4HI GCNGC 7 cut(s) 71, 165, 322, 591, 745, 812, 1051
FokI GGATG 7 cut(s) 49, 478, 512, 565, 900, 1101, 1178
Fsp4HI GCNGC 7 cut(s) 71, 165, 322, 591, 745, 812, 1051
FspBI CTAG 2 cut(s) 152, 309
GlaI GCGC 2 cut(s) 536, 561
GluI GCNGC 7 cut(s) 71, 165, 322, 591, 745, 812, 1051
GsaI CCCAGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 916
HaeIII GGCC 6 cut(s) 149, 306, 503, 654, 824, 846
HapII CCGG 1 cut(s) 843
HgaI GACGC 3 cut(s) 97, 614, 1169
HhaI GCGC 2 cut(s) 537, 562
Hin1II CATG 3 cut(s) 598, 752, 1033
Hin6I GCGC 2 cut(s) 535, 560
HinP1I GCGC 2 cut(s) 535, 560
HinfI GANTC 5 cut(s) 56, 128, 138, 659, 665
HpaII CCGG 1 cut(s) 843
HphI GGTGA 3 cut(s) 478, 487, 988
Hpy188I TCNGA 5 cut(s) 48, 612, 664, 960, 1134
Hpy188III TCNNGA 3 cut(s) 142, 895, 1196
Hpy99I CGWCG 5 cut(s) 113, 490, 605, 608, 722
HpyAV CCTTC 8 cut(s) 97, 139, 577, 592, 788, 835, 1049, 1098
HpyCH4III ACNGT 3 cut(s) 223, 290, 380
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 2 cut(s) 30, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 318
HpyF3I CTNAG 4 cut(s) 172, 329, 549, 637
HpySE526I ACGT 1 cut(s) 720
Hsp92II CATG 3 cut(s) 598, 752, 1033
HspAI GCGC 2 cut(s) 535, 560
Kzo9I GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
LmnI GCTCC 1 cut(s) 1047
Lsp1109I GCAGC 7 cut(s) 82, 151, 308, 577, 756, 823, 1037
LweI GCATC 3 cut(s) 451, 554, 878
MaeI CTAG 2 cut(s) 152, 309
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 2 cut(s) 466, 1066
MalI GATC 6 cut(s) 50, 117, 230, 387, 1131, 1194
MbiI CCGCTC 1 cut(s) 1045
MboI GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
MboII GAAGA 9 cut(s) 16, 125, 238, 395, 697, 779, 800, 955, 991
MhlI GDGCHC 1 cut(s) 1029
MluCI AATT 7 cut(s) 212, 252, 280, 369, 803, 866, 1145
MlyI GAGTC 2 cut(s) 50, 659
MmeI TCCRAC 2 cut(s) 687, 938
MseI TTAA 1 cut(s) 1201
MslI CAYNNNNRTG 2 cut(s) 263, 648
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 5 cut(s) 108, 240, 397, 560, 1163
MwoI GCNNNNNNNGC 2 cut(s) 161, 318
NcoI CCATGG 1 cut(s) 748
NdeII GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
NlaIII CATG 3 cut(s) 598, 752, 1033
NlaIV GGNNCC 2 cut(s) 25, 655
NmuCI GTSAC 1 cut(s) 466
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 128, 138, 659
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 7 cut(s) 72, 166, 323, 592, 746, 813, 1052
PleI GAGTC 2 cut(s) 50, 659
PpsI GAGTC 2 cut(s) 50, 659
PsiI TTATAA 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 25, 655
PspPI GGNCC 4 cut(s) 148, 305, 553, 653
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 3 cut(s) 220, 377, 903
RsaNI GTAC 3 cut(s) 219, 376, 902
RseI CAYNNNNRTG 2 cut(s) 263, 648
SaqAI TTAA 1 cut(s) 1201
SatI GCNGC 7 cut(s) 71, 165, 322, 591, 745, 812, 1051
Sau3AI GATC 6 cut(s) 48, 115, 228, 385, 1129, 1192
Sau96I GGNCC 4 cut(s) 148, 305, 553, 653
SchI GAGTC 2 cut(s) 50, 659
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 1029
SfaNI GCATC 3 cut(s) 451, 554, 878
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 263, 648
Sse9I AATT 7 cut(s) 212, 252, 280, 369, 803, 866, 1145
SsiI CCGC 7 cut(s) 34, 106, 464, 588, 1037, 1045, 1163
SspMI CTAG 2 cut(s) 152, 309
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 60, 748
TaaI ACNGT 3 cut(s) 223, 290, 380
TaiI ACGT 1 cut(s) 723
TasI AATT 7 cut(s) 212, 252, 280, 369, 803, 866, 1145
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 3 cut(s) 128, 138, 659
Tru1I TTAA 1 cut(s) 1201
Tru9I TTAA 1 cut(s) 1201
TscAI CASTG 3 cut(s) 106, 295, 715
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 7 cut(s) 70, 164, 321, 590, 744, 811, 1050
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 5 cut(s) 17, 449, 801, 807, 1185
TspRI CASTG 3 cut(s) 106, 295, 715
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 2 cut(s) 803, 1145
XspI CTAG 2 cut(s) 152, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.