Rh2DG385100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015719
Physical Location & Seq
Reverse (-)
55748512 .. 55748739
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG385100.1

Sequence Viewer

Length: 228 bp
ATGTGCGACGACGTTTTGACCTCCAGCGACGACCTCGAAAGAATCTCAGCACCAGGTGGTGGTGACGATTCCGACTCATACAATCCATTCCTAAACTTCAAGTTCGAGTTTGTCTTCAATGGAGATGACGCGGCGGAGACAACGTGGAGGAGGTGGGTTCCGGCGAGCTGGGCATGGGCCAGGCCCTGTTCTGTGAGCAGGATTTTGTTGTCCGAGGTGGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

4.13

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 131, 134
AdeI CACNNNGTG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 100, 118
AjnI CCWGG 2 cut(s) 52, 179
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 186
AoxI GGCC 2 cut(s) 177, 182
AspS9I GGNCC 2 cut(s) 177, 183
AsuHPI GGTGA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 54, 181
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 54, 181
BmgT120I GGNCC 2 cut(s) 177, 183
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 54, 181
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseBI CCWGG 2 cut(s) 54, 181
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 179, 184
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 179, 184
BspACI CCGC 2 cut(s) 131, 134
BspANI GGCC 2 cut(s) 179, 184
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 54, 181
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 2 cut(s) 54, 181
BstSCI CCNGG 2 cut(s) 52, 179
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 179, 184
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 177, 183
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 52
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 168, 179, 184
CviKI_1 RGCY 3 cut(s) 168, 179, 184
DdeI CTNAG 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 56
EciI GGCGGA 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 52, 179
FaeI CATG 1 cut(s) 177
FaiI YATR 2 cut(s) 79, 175
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 179, 184
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 177
HinfI GANTC 3 cut(s) 42, 68, 74
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 73, 214
Hpy99I CGWCG 3 cut(s) 11, 14, 32
HpyCH4IV ACGT 2 cut(s) 12, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 2 cut(s) 12, 143
Hsp92II CATG 1 cut(s) 177
LpnPI CCDG 9 cut(s) 37, 39, 66, 154, 166, 174, 184, 193, 199
MabI ACCWGGT 1 cut(s) 52
MaeII ACGT 2 cut(s) 12, 143
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 1 cut(s) 106
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 31, 44, 141, 144, 208
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 54, 181
MvaI CCWGG 2 cut(s) 54, 181
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 170
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 42, 68
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 52, 179
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 52, 179
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 177, 183
PstNI CAGNNNCTG 1 cut(s) 186
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 177, 183
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 54, 181
SetI ASST 8 cut(s) 15, 23, 36, 58, 146, 155, 170, 219
SexAI ACCWGGT 1 cut(s) 52
SsiI CCGC 2 cut(s) 131, 134
StyD4I CCNGG 2 cut(s) 52, 179
TaiI ACGT 2 cut(s) 15, 146
TaqI TCGA 2 cut(s) 36, 105
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 42, 68
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.