RchiOBHm_Chr3g0463371

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016941
Physical Location & Seq
Forward (+)
10759493 .. 10760944
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42969

Sequence Viewer

Length: 1260 bp
ATGCCTTGTAATCTACGTGTGCTTGACCTTCATTCTAATCAGCTCCAGGGGAAAATCCCAGTTCTCTCATCACCTCATGTTCTGGCTCTAGATTACTCCAGGAATAATTTCAGCTCTAGCATTCCGGCTGACATTGGTGCATGTTTCACTAGTGACACTATATTCTTCTCTGTTGCAAGCAATAACCTCCATGGGATCATTCCAAGGTCAATATGCAATTCACAATCTCTCAAGATTCTTGATCTGTCCAATAATTCATTGAGCGGCAGCTTTCCTCAGTGCTTGACTACAATGAAACCTCTTGCAGTGCTTAATTTGAGGAGAAACAATCTTACAGATTATATTGCTGATAAATTTCCTCAAAGTTGCAGCTTACAAAGTCTAGACTTGAGTGGAAATCAGATACAATTAAGGACAATTTCCAAAATCTCTAGCCAACTGCATGAAGCTGGAGGATCATCTATGTCGACCTGGCAGGCAATGATGGCTAACAAAGATGATGCTGCATCAAAGCTCAGTCACCTTCAATTTCACAACCAGTATTTTCATCAGGTTAATTATCAGGATGCAATTACTGTGACTAGCAAAGGCATAGATATGGAGTTGGTAAAGATTCTACCTGTCTTCACCTCAATTGACTTCTCATGCAACAAGTTCAACGGACCAATACCTGAGGAAGTTGGAGAATTGAAATCCTTACATGTTATCAACCTGTCGGATAATGTTTTTACAGGTGAAATCCCATCATCATTAGGAAACTTGCAACAACTTGAGTCCTTAGACATCTCACAGAACAACCTGGGCGGCCAAATTCCACCACAGCTTGCAAACCTTTCTTTCCTTTCATTCTTGAATGTGTTATACAATCAACTGGTTGGGGAGATCCCAAAAGGTACTCAGATTTCAACATTTTCGAAAGCTTCATTTGTAGGTAATAAAGGATTATATGGGCCACCTTTGACAGCAGAAAACAGACCAGTGTTGTCATCACCAACATTAGAAGGAAGCCATCAAAATTCTGGAGGTGAGATCTATTGGGATCTTATCAGTGCTGAAATTGGATTTACATGTGGAATCGGAATGGCGATCGGATCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTACTACAGAACTATGTTTAACATCCTCGTTAAGATATTCCCTCAGTTGGAAGAAAGATGTGGTAATTACAGAGAAATTGAACCGAGTATGGAGAGCAATGCAGCCGGATTCAATTGTGGCCGGAGCTCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

419

Amino Acids

46.12

Weight (kDa)

6.31

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 76 - 135 2.8e-10 Leucine rich repeat
LRR_14 PF23598 223 - 287 2.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 467
AciI CCGC 2 cut(s) 264, 804
AclWI GGATC 5 cut(s) 203, 463, 877, 1047, 1099
AcoI YGGCCR 2 cut(s) 805, 1243
AcsI RAATTY 3 cut(s) 353, 810, 1015
AfaI GTAC 2 cut(s) 895, 1127
AfiI CCNNNNNNNGG 1 cut(s) 1171
AflIII ACRYGT 3 cut(s) 16, 700, 1067
AgsI TTSAA 7 cut(s) 527, 658, 691, 853, 906, 1205, 1237
AhlI ACTAGT 1 cut(s) 149
AjnI CCWGG 4 cut(s) 45, 98, 470, 798
AluBI AGCT 9 cut(s) 43, 114, 270, 372, 449, 514, 823, 920, 1251
AluI AGCT 9 cut(s) 43, 114, 270, 372, 449, 514, 823, 920, 1251
Alw21I GWGCWC 1 cut(s) 1253
AlwI GGATC 5 cut(s) 203, 463, 877, 1047, 1099
AoxI GGCC 3 cut(s) 805, 950, 1243
ApeKI GCWGC 4 cut(s) 267, 369, 503, 1226
ApoI RAATTY 3 cut(s) 353, 810, 1015
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 662, 950
AsuHPI GGTGA 6 cut(s) 63, 512, 619, 746, 981, 1037
AsuII TTCGAA 1 cut(s) 914
AvaII GGWCC 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 672
BanII GRGCYC 1 cut(s) 1253
BbsI GAAGAC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 1253
BbvI GCAGC 4 cut(s) 279, 381, 490, 1238
BccI CCATC 4 cut(s) 478, 751, 1017, 1107
BciT130I CCWGG 4 cut(s) 47, 100, 472, 800
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 7 cut(s) 89, 117, 150, 383, 432, 582, 1258
BfmI CTRYAG 1 cut(s) 1129
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 6 cut(s) 265, 268, 370, 504, 805, 1227
BlsI GCNGC 6 cut(s) 266, 269, 371, 505, 806, 1228
Bme1390I CCNGG 4 cut(s) 47, 100, 472, 800
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 2 cut(s) 662, 950
BmrFI CCNGG 4 cut(s) 47, 100, 472, 800
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 3 cut(s) 490, 515, 556
BmuI ACTGGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 616
BpmI CTGGAG 4 cut(s) 29, 82, 471, 1041
Bpu14I TTCGAA 1 cut(s) 914
BpuEI CTTGAG 3 cut(s) 215, 409, 791
BsaAI YACGTR 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 46, 190, 203, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 1171
Bse1I ACTGG 4 cut(s) 59, 538, 876, 977
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 2 cut(s) 486, 1228
BseBI CCWGG 4 cut(s) 47, 100, 472, 800
BseDI CCNNGG 4 cut(s) 46, 190, 203, 799
BseGI GGATG 2 cut(s) 571, 1146
BseLI CCNNNNNNNGG 1 cut(s) 1171
BseMI GCAATG 2 cut(s) 486, 1228
BseMII CTCAG 5 cut(s) 290, 529, 663, 911, 1181
BseNI ACTGG 4 cut(s) 59, 538, 876, 977
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 4 cut(s) 279, 381, 490, 1238
Bsh1285I CGRYCG 1 cut(s) 1089
BshFI GGCC 3 cut(s) 807, 952, 1245
BsiEI CGRYCG 1 cut(s) 1089
BsiHKAI GWGCWC 1 cut(s) 1253
BsiSI CCGG 3 cut(s) 125, 1230, 1246
BslI CCNNNNNNNGG 1 cut(s) 1171
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 3 cut(s) 807, 952, 1245
Bsp119I TTCGAA 1 cut(s) 914
Bsp1286I GDGCHC 1 cut(s) 1253
Bsp143I GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 2 cut(s) 264, 804
BspANI GGCC 3 cut(s) 807, 952, 1245
BspCNI CTCAG 5 cut(s) 289, 528, 664, 910, 1180
BspPI GGATC 5 cut(s) 203, 463, 877, 1047, 1099
BspT104I TTCGAA 1 cut(s) 914
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 2 cut(s) 486, 1228
BsrI ACTGG 4 cut(s) 59, 538, 876, 977
BssECI CCNNGG 4 cut(s) 46, 190, 203, 799
BssMI GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
BssT1I CCWWGG 2 cut(s) 190, 203
Bst2UI CCWGG 4 cut(s) 47, 100, 472, 800
Bst4CI ACNGT 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 914
BstC8I GCNNGC 3 cut(s) 178, 477, 825
BstDEI CTNAG 6 cut(s) 276, 515, 672, 778, 897, 1167
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 571, 1146
BstKTI GATC 8 cut(s) 198, 244, 458, 885, 1032, 1042, 1089, 1094
BstMBI GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
BstMCI CGRYCG 1 cut(s) 1089
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 4 cut(s) 47, 100, 472, 800
BstNSI RCATGY 3 cut(s) 144, 704, 1071
BstSCI CCNGG 4 cut(s) 45, 98, 470, 798
BstSFI CTRYAG 1 cut(s) 1129
BstV1I GCAGC 4 cut(s) 279, 381, 490, 1238
BstV2I GAAGAC 1 cut(s) 616
BstX2I RGATCY 3 cut(s) 882, 1029, 1039
BstYI RGATCY 3 cut(s) 882, 1029, 1039
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 3 cut(s) 807, 952, 1245
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 571, 1146
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 4 cut(s) 284, 312, 984, 1054
Cac8I GCNNGC 3 cut(s) 178, 477, 825
Cfr13I GGNCC 2 cut(s) 662, 950
Csp6I GTAC 2 cut(s) 894, 1126
CviAII CATG 7 cut(s) 77, 141, 191, 443, 645, 701, 1068
CviQI GTAC 2 cut(s) 894, 1126
DdeI CTNAG 6 cut(s) 276, 515, 672, 778, 897, 1167
DpnI GATC 8 cut(s) 197, 243, 457, 884, 1031, 1041, 1088, 1093
DpnII GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
EaeI YGGCCR 2 cut(s) 805, 1243
Ecl136II GAGCTC 1 cut(s) 1251
Eco130I CCWWGG 2 cut(s) 190, 203
Eco24I GRGCYC 1 cut(s) 1253
Eco47I GGWCC 1 cut(s) 662
Eco53kI GAGCTC 1 cut(s) 1251
Eco81I CCTNAGG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 1251
EcoRII CCWGG 4 cut(s) 45, 98, 470, 798
EcoT14I CCWWGG 2 cut(s) 190, 203
EcoT38I GRGCYC 1 cut(s) 1253
ErhI CCWWGG 2 cut(s) 190, 203
FaeI CATG 7 cut(s) 80, 144, 194, 446, 648, 704, 1071
FatI CATG 7 cut(s) 76, 140, 190, 442, 644, 700, 1067
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 6 cut(s) 265, 268, 370, 504, 805, 1227
FokI GGATG 2 cut(s) 578, 1133
FriOI GRGCYC 1 cut(s) 1253
Fsp4HI GCNGC 6 cut(s) 265, 268, 370, 504, 805, 1227
FspBI CTAG 7 cut(s) 89, 117, 150, 383, 432, 582, 1258
GluI GCNGC 6 cut(s) 265, 268, 370, 504, 805, 1227
GsuI CTGGAG 4 cut(s) 29, 82, 471, 1041
HaeIII GGCC 3 cut(s) 807, 952, 1245
HapII CCGG 3 cut(s) 125, 1230, 1246
Hin1II CATG 7 cut(s) 80, 144, 194, 446, 648, 704, 1071
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 5 cut(s) 235, 613, 773, 1074, 1233
HpaII CCGG 3 cut(s) 125, 1230, 1246
HphI GGTGA 6 cut(s) 63, 512, 619, 746, 981, 1037
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 5 cut(s) 402, 718, 900, 1079, 1091
Hpy188III TCNNGA 7 cut(s) 89, 232, 239, 383, 563, 850, 1020
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 3 cut(s) 38, 533, 995
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 6 cut(s) 276, 515, 672, 778, 897, 1167
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 7 cut(s) 80, 144, 194, 446, 648, 704, 1071
Kzo9I GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
LmnI GCTCC 2 cut(s) 48, 1248
Lsp1109I GCAGC 4 cut(s) 279, 381, 490, 1238
LweI GCATC 3 cut(s) 490, 515, 556
MaeI CTAG 7 cut(s) 89, 117, 150, 383, 432, 582, 1258
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 3 cut(s) 152, 518, 577
MalI GATC 8 cut(s) 197, 243, 457, 884, 1031, 1041, 1088, 1093
MbiI CCGCTC 1 cut(s) 264
MboI GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
MboII GAAGA 3 cut(s) 157, 616, 1187
MfeI CAATTG 2 cut(s) 633, 1237
MflI RGATCY 3 cut(s) 882, 1029, 1039
MhlI GDGCHC 1 cut(s) 1253
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 3 cut(s) 661, 696, 1152
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 5 cut(s) 312, 410, 555, 1143, 1155
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 3 cut(s) 125, 1230, 1246
MspR9I CCNGG 4 cut(s) 47, 100, 472, 800
MunI CAATTG 2 cut(s) 633, 1237
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 4 cut(s) 47, 100, 472, 800
MwoI GCNNNNNNNGC 1 cut(s) 485
NcoI CCATGG 1 cut(s) 190
NdeII GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
NlaIII CATG 7 cut(s) 80, 144, 194, 446, 648, 704, 1071
NmuCI GTSAC 3 cut(s) 152, 518, 577
NspI RCATGY 3 cut(s) 144, 704, 1071
NspV TTCGAA 1 cut(s) 914
PciI ACATGT 2 cut(s) 700, 1067
PctI GAATGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 4 cut(s) 235, 613, 1074, 1233
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 6 cut(s) 266, 269, 371, 505, 806, 1228
Ple19I CGATCG 1 cut(s) 1089
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 2 cut(s) 700, 1067
Psp124BI GAGCTC 1 cut(s) 1253
Psp6I CCWGG 4 cut(s) 45, 98, 470, 798
PspGI CCWGG 4 cut(s) 45, 98, 470, 798
PspPI GGNCC 2 cut(s) 662, 950
PsuI RGATCY 3 cut(s) 882, 1029, 1039
PvuI CGATCG 1 cut(s) 1089
RsaI GTAC 2 cut(s) 895, 1127
RsaNI GTAC 2 cut(s) 894, 1126
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 1253
SalI GTCGAC 1 cut(s) 466
SaqAI TTAA 5 cut(s) 312, 410, 555, 1143, 1155
SatI GCNGC 6 cut(s) 265, 268, 370, 504, 805, 1227
Sau3AI GATC 8 cut(s) 195, 241, 455, 882, 1029, 1039, 1086, 1091
Sau96I GGNCC 2 cut(s) 662, 950
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 4 cut(s) 47, 100, 472, 800
SduI GDGCHC 1 cut(s) 1253
SfaNI GCATC 3 cut(s) 490, 515, 556
SfcI CTRYAG 1 cut(s) 1129
SfuI TTCGAA 1 cut(s) 914
SinI GGWCC 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 3 cut(s) 230, 388, 770
SmoI CTYRAG 3 cut(s) 230, 388, 770
SpeI ACTAGT 1 cut(s) 149
SsiI CCGC 2 cut(s) 264, 804
SspMI CTAG 7 cut(s) 89, 117, 150, 383, 432, 582, 1258
SstI GAGCTC 1 cut(s) 1253
StyD4I CCNGG 4 cut(s) 45, 98, 470, 798
StyI CCWWGG 2 cut(s) 190, 203
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 467, 914
TauI GCSGC 2 cut(s) 267, 807
TfiI GAWTC 4 cut(s) 235, 613, 1074, 1233
Tru1I TTAA 5 cut(s) 312, 410, 555, 1143, 1155
Tru9I TTAA 5 cut(s) 312, 410, 555, 1143, 1155
TscAI CASTG 4 cut(s) 284, 312, 984, 1054
TseFI GTSAC 3 cut(s) 152, 518, 577
TseI GCWGC 4 cut(s) 267, 369, 503, 1226
Tsp45I GTSAC 3 cut(s) 152, 518, 577
TspDTI ATGAA 7 cut(s) 20, 246, 308, 459, 536, 834, 912
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 4 cut(s) 284, 312, 984, 1054
VpaK11BI GGWCC 1 cut(s) 662
XapI RAATTY 3 cut(s) 353, 810, 1015
XbaI TCTAGA 2 cut(s) 88, 382
XceI RCATGY 3 cut(s) 144, 704, 1071
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 7 cut(s) 89, 117, 150, 383, 432, 582, 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.