Rmu_sc0000923.1_g000004

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000923.1
OG0016941
Physical Location & Seq
Forward (+)
19029 .. 19514
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000923.1_g000004.1.cds

Sequence Viewer

Length: 486 bp
atgcttgatgggaatattccatcatctctgttttctctgcccttgctctatagtctagatctttccaacaaccgattctctggtcaattccatgaaatttctaatttctcttcctgctttctggaatttcttgttctgcgtagcaatgatttggaaggggaaataccaatgtctatacataacatccgaggacttcagagtctcgcactcgagtcaaacaagttgaatggtacatttgctatcaatagtcttcatcagttcagaaatctttcttatcttgacctttcatacaacagcctgttgcttagtcttgatgctaccaacttctcgcattcctcctttccccagtttagagtcttgaggttggcttcagggaagttgagaagtccattcccagagtttttgagaaatcaatccaaattggagcatttggacctctcagacacctacatacatggcaggtatatcgatttgggggctcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

161

Amino Acids

18.29

Weight (kDa)

6.03

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 450
AcsI RAATTY 2 cut(s) 96, 125
AcuI CTGAAG 2 cut(s) 179, 354
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
Alw26I GTCTC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 209
ApoI RAATTY 2 cut(s) 96, 125
Asp700I GAANNNNTTC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 242
BccI CCATC 2 cut(s) 2, 28
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 450
BglII AGATCT 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 433
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 452
BspDI ATCGAT 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 115
BstDEI CTNAG 3 cut(s) 305, 439, 480
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 468
BsuTUI ATCGAT 1 cut(s) 468
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 433
ClaI ATCGAT 1 cut(s) 468
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 92, 455
CviJI RGCY 3 cut(s) 297, 368, 479
CviKI_1 RGCY 3 cut(s) 297, 368, 479
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 3 cut(s) 305, 439, 480
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 198
DseDI GACNNNNNNGTC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 2 cut(s) 179, 354
Eco88I CYCGRG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 2 cut(s) 95, 458
FaiI YATR 8 cut(s) 51, 93, 176, 180, 289, 452, 456, 465
FatI CATG 2 cut(s) 91, 454
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 481
FspBI CTAG 1 cut(s) 56
Hin1II CATG 2 cut(s) 95, 458
HinfI GANTC 4 cut(s) 75, 199, 212, 354
Hpy188I TCNGA 4 cut(s) 188, 198, 263, 442
Hpy188III TCNNGA 5 cut(s) 56, 122, 278, 311, 358
HpyAV CCTTC 1 cut(s) 149
HpyF3I CTNAG 3 cut(s) 305, 439, 480
Hsp92II CATG 2 cut(s) 95, 458
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 8 cut(s) 66, 107, 127, 311, 357, 359, 408, 445
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 56
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 102, 242
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 5 cut(s) 86, 96, 103, 125, 419
MlyI GAGTC 3 cut(s) 208, 221, 363
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 182, 346, 354, 446
MroXI GAANNNNTTC 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 331
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 95, 458
PaeR7I CTCGAG 1 cut(s) 209
PctI GAATGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 75
PleI GAGTC 3 cut(s) 207, 220, 362
PpsI GAGTC 3 cut(s) 207, 220, 362
PspPI GGNCC 1 cut(s) 433
PspXI VCTCGAGB 1 cut(s) 209
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 3 cut(s) 208, 221, 363
SduI GDGCHC 1 cut(s) 481
SetI ASST 5 cut(s) 285, 365, 438, 449, 464
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 209, 358
SmoI CTYRAG 2 cut(s) 209, 358
Sse9I AATT 5 cut(s) 86, 96, 103, 125, 419
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 56
TaqI TCGA 2 cut(s) 210, 468
TasI AATT 5 cut(s) 86, 96, 103, 125, 419
TfiI GAWTC 1 cut(s) 75
TspDTI ATGAA 3 cut(s) 108, 242, 276
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 2 cut(s) 96, 125
XbaI TCTAGA 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.