RLG00000024790

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016941
Physical Location & Seq
Reverse (-)
39148389 .. 39149234
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024790

Sequence Viewer

Length: 576 bp
ATGCTGACTGATATTGGTGAGTGTTTCTCTGATGGTACTGCATTCTTCTCTACTTCAAGCAATAACCACAGCGGGATCATTCCAGAATCAATATGCAATTCACCTTATCTTGAGGTTCTTGATCTTCCCAATAATTCTTTCACTGGCACGGTTCCTCATCTAGATGTGAGTGCAAATCAGTTAAAAGGTCAGTCTCCAAGATCTCTTGTCAATTGCACAGAGTTGGAGATCATAGATCTAGCTTATAACAATTTTGATGGTGAAATACCTGGAAGATCTTTATCAACCTGGAAGGCAATGATGGCAAATGAAGCCGGGGCTGCATCAAATCATCTTAAAATTCAGGGAGATGCAGTTGCAGTTAGTAGCAAAGGTATACAGATGAACCTGGTAAATATTTTAACTCCGTTCACCTTGATTGACTTCTCATGCAACAAGTTCAATGGATCAATGCTCGAGGAAATTGGAGAATTAAAATCACTACTAGTCCTCAACTTGTCGAATAATGCTTTCACAGGTGCAATTCCATCATCATTAAGTAATTTGCAAGAAGTTGAGTCTTTAGACCTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

192

Amino Acids

20.45

Weight (kDa)

4.33

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccI GTMKAC 1 cut(s) 376
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 83, 454
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 2 cut(s) 57, 442
AhlI ACTAGT 1 cut(s) 484
AjnI CCWGG 3 cut(s) 268, 287, 387
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 83, 454
Ama87I CYCGRG 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 4 cut(s) 29, 93, 272, 403
AvaI CYCGRG 1 cut(s) 455
BbvI GCAGC 1 cut(s) 307
BccI CCATC 4 cut(s) 26, 251, 295, 535
BciT130I CCWGG 3 cut(s) 270, 289, 389
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 198
BcuI ACTAGT 1 cut(s) 484
BfaI CTAG 3 cut(s) 161, 239, 485
BglII AGATCT 3 cut(s) 200, 235, 275
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 4 cut(s) 270, 289, 316, 389
BmeT110I CYCGRG 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 4 cut(s) 270, 289, 316, 389
BmsI GCATC 2 cut(s) 332, 340
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 3 cut(s) 270, 289, 389
BseDI CCNNGG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 280
BseMI GCAATG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
BspACI CCGC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 83, 454
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
BssNAI GTATAC 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 377
Bst2UI CCWGG 3 cut(s) 270, 289, 389
Bst4CI ACNGT 1 cut(s) 151
BstKTI GATC 7 cut(s) 78, 124, 203, 231, 238, 278, 449
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
BstMWI GCNNNNNNNGC 3 cut(s) 302, 311, 320
BstNI CCWGG 3 cut(s) 270, 289, 389
BstSCI CCNGG 4 cut(s) 268, 287, 314, 387
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 3 cut(s) 200, 235, 275
BstYI RGATCY 3 cut(s) 200, 235, 275
BstZ17I GTATAC 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 141
CsiI ACCWGGT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 429
CviJI RGCY 3 cut(s) 242, 314, 320
CviKI_1 RGCY 3 cut(s) 242, 314, 320
CviQI GTAC 1 cut(s) 36
DpnI GATC 7 cut(s) 77, 123, 202, 230, 237, 277, 448
DpnII GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
Eco88I CYCGRG 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 268, 287, 387
FaeI CATG 1 cut(s) 432
FaiI YATR 6 cut(s) 94, 233, 246, 377, 430, 574
FatI CATG 1 cut(s) 428
FauI CCCGC 1 cut(s) 65
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 3 cut(s) 161, 239, 485
GluI GCNGC 1 cut(s) 321
HapII CCGG 1 cut(s) 315
Hin1II CATG 1 cut(s) 432
HinfI GANTC 2 cut(s) 86, 557
HpaII CCGG 1 cut(s) 315
HphI GGTGA 4 cut(s) 29, 93, 272, 403
Hpy166II GTNNAC 2 cut(s) 377, 411
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 4 cut(s) 83, 110, 119, 161
Hpy8I GTNNAC 2 cut(s) 377, 411
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 311, 320
Hsp92II CATG 1 cut(s) 432
Kzo9I GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 2 cut(s) 332, 340
MabI ACCWGGT 1 cut(s) 387
MaeI CTAG 3 cut(s) 161, 239, 485
MalI GATC 7 cut(s) 77, 123, 202, 230, 237, 277, 448
MboI GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
MboII GAAGA 3 cut(s) 37, 116, 285
MfeI CAATTG 1 cut(s) 211
MflI RGATCY 3 cut(s) 200, 235, 275
MluCI AATT 9 cut(s) 97, 133, 211, 250, 339, 462, 470, 522, 541
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 106, 165, 451, 500
MseI TTAA 5 cut(s) 182, 336, 401, 473, 536
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 4 cut(s) 270, 289, 316, 389
MunI CAATTG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 3 cut(s) 270, 289, 389
MwoI GCNNNNNNNGC 3 cut(s) 302, 311, 320
NciI CCSGG 1 cut(s) 316
NdeII GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
NlaIII CATG 1 cut(s) 432
NlaIV GGNNCC 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 455
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 268, 287, 387
PspGI CCWGG 3 cut(s) 268, 287, 387
PspN4I GGNNCC 1 cut(s) 153
PspXI VCTCGAGB 1 cut(s) 455
PsuI RGATCY 3 cut(s) 200, 235, 275
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 5 cut(s) 182, 336, 401, 473, 536
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 7 cut(s) 75, 121, 200, 228, 235, 275, 446
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 4 cut(s) 270, 289, 316, 389
SexAI ACCWGGT 1 cut(s) 387
SfaNI GCATC 2 cut(s) 332, 340
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 110, 455
SmoI CTYRAG 2 cut(s) 110, 455
SpeI ACTAGT 1 cut(s) 484
Sse9I AATT 9 cut(s) 97, 133, 211, 250, 339, 462, 470, 522, 541
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 397
SspMI CTAG 3 cut(s) 161, 239, 485
StyD4I CCNGG 4 cut(s) 268, 287, 314, 387
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 456, 500
TasI AATT 9 cut(s) 97, 133, 211, 250, 339, 462, 470, 522, 541
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 5 cut(s) 182, 336, 401, 473, 536
Tru9I TTAA 5 cut(s) 182, 336, 401, 473, 536
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 324, 398
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 3 cut(s) 161, 239, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.