Rroxscaffold_6G00416610

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016941
Physical Location & Seq
Reverse (-)
38589722 .. 38590635
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416610.1

Sequence Viewer

Length: 804 bp
ATGTCTATACATAACATCCGAGGACTTCAGAGTCTCGCACTCGAGTCAAACAAGTTGAATGGTACATTTGCTATCAATAGTCTTCATCAGTTCAGAAATCTTTCTTATCTTGACCTTGCATACAACAGCCTGTTGCTTAGTCTTGATGCTACCAACTTCTCGCATTCCTCCTTTCCCCAGTTTAGAGTCTTGAGGTTGGCTTCAGGGAAGTTGAGAAGTCCATTCCCAGAGTTTTTGAGAAATCAATCCAAATTGGAGCATTTGGACCTCTCAGACACCTACATACATGGCAAGATATACCCAATTGGATTTGGGGGCTCACTCCAGGGGAAAATCCCAGTTCTCTCATCACCTCATGTTCTGGCTCTAGATTACTCCAGGAATAATTTCAGCTCTAGCATTCCGGCTGACATTGGTGCATGTTTCACTAGTGACACTATATTCTTCTCTGTTGCAAGCAATAACCTCCATGGGATCATTCCAAGGTCAATATGCAATTCACAATCTCTCGAGATTCTTGATCTGTCCAATAATTCATTGAGTGGCAGCTTTCCTCAGTGCTTGATTACAATGAAACCTCTTGCAGTGCTTAATTTGAGGAGAAACAATCTTACAGATTATATAGCTGATGAATTTCCTCAAAGTTGCAGCTTACAAAGTCTAGACTTAAGTGGAAATCAGATACAAGCTAGGACAATTTCCAAAATCTCTAGCCGACTGCATGAAGCTGGAGGTTTTAATTCTCGGAAACAATCAGATAACATATGCCTTTCCATGCTTTTTGAAGAACATATCTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

267

Amino Acids

29.65

Weight (kDa)

8.28

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 169 - 228 2.9e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 30
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 2 cut(s) 11, 186
AfaI GTAC 1 cut(s) 64
AflII CTTAAG 1 cut(s) 667
AgsI TTSAA 2 cut(s) 58, 785
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 2 cut(s) 324, 377
AluBI AGCT 6 cut(s) 393, 549, 626, 651, 689, 728
AluI AGCT 6 cut(s) 393, 549, 626, 651, 689, 728
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 41, 509
ApeKI GCWGC 2 cut(s) 546, 648
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 2 cut(s) 100, 386
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 342
AvaI CYCGRG 2 cut(s) 41, 509
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 558, 660
BciT130I CCWGG 2 cut(s) 326, 379
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 6 cut(s) 368, 396, 429, 662, 690, 711
BfrI CTTAAG 1 cut(s) 667
BisI GCNGC 2 cut(s) 547, 649
BlsI GCNGC 2 cut(s) 548, 650
Bme1390I CCNGG 2 cut(s) 326, 379
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 41, 509
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 326, 379
BmrI ACTGGG 2 cut(s) 172, 332
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 2 cut(s) 172, 332
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 3 cut(s) 308, 361, 750
BpuEI CTTGAG 1 cut(s) 211
BsaJI CCNNGG 4 cut(s) 19, 325, 469, 482
Bse1I ACTGG 2 cut(s) 178, 338
BseBI CCWGG 2 cut(s) 326, 379
BseDI CCNNGG 4 cut(s) 19, 325, 469, 482
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 285, 569
BseNI ACTGG 2 cut(s) 178, 338
BseRI GAGGAG 1 cut(s) 613
BseXI GCAGC 2 cut(s) 558, 660
BsiHKCI CYCGRG 2 cut(s) 41, 509
BsiSI CCGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 163, 399
BsoBI CYCGRG 2 cut(s) 41, 509
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 474, 520
Bsp19I CCATGG 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 284, 568
BspPI GGATC 1 cut(s) 482
BspTI CTTAAG 1 cut(s) 667
BsrI ACTGG 2 cut(s) 178, 338
BssECI CCNNGG 4 cut(s) 19, 325, 469, 482
BssMI GATC 2 cut(s) 474, 520
BssT1I CCWWGG 2 cut(s) 469, 482
Bst2UI CCWGG 2 cut(s) 326, 379
BstAFI CTTAAG 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 137, 271, 555
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 477, 523
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 474, 520
BstNI CCWGG 2 cut(s) 326, 379
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 324, 377
BstV1I GCAGC 2 cut(s) 558, 660
BstV2I GAAGAC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 563, 591
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 63
CviAII CATG 6 cut(s) 287, 356, 420, 470, 722, 775
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 137, 271, 555
DpnI GATC 2 cut(s) 476, 522
DpnII GATC 2 cut(s) 474, 520
DrdI GACNNNNNNGTC 1 cut(s) 30
DseDI GACNNNNNNGTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 469, 482
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 11, 186
Eco88I CYCGRG 2 cut(s) 41, 509
EcoRII CCWGG 2 cut(s) 324, 377
EcoT14I CCWWGG 2 cut(s) 469, 482
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 469, 482
FaeI CATG 6 cut(s) 290, 359, 423, 473, 725, 778
FatI CATG 6 cut(s) 286, 355, 419, 469, 721, 774
FauNDI CATATG 1 cut(s) 764
Fnu4HI GCNGC 2 cut(s) 547, 649
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 547, 649
FspBI CTAG 6 cut(s) 368, 396, 429, 662, 690, 711
GluI GCNGC 2 cut(s) 547, 649
GsuI CTGGAG 3 cut(s) 308, 361, 750
HapII CCGG 1 cut(s) 404
Hin1II CATG 6 cut(s) 290, 359, 423, 473, 725, 778
HinfI GANTC 4 cut(s) 31, 44, 186, 514
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 342
Hpy188I TCNGA 7 cut(s) 20, 30, 95, 274, 681, 747, 757
Hpy188III TCNNGA 8 cut(s) 110, 143, 190, 368, 509, 511, 518, 662
HpyCH4V TGCA 7 cut(s) 119, 419, 455, 495, 584, 648, 721
HpyF3I CTNAG 3 cut(s) 137, 271, 555
Hsp92II CATG 6 cut(s) 290, 359, 423, 473, 725, 778
Kzo9I GATC 2 cut(s) 474, 520
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 558, 660
LweI GCATC 1 cut(s) 136
MaeI CTAG 6 cut(s) 368, 396, 429, 662, 690, 711
MaeIII GTNAC 1 cut(s) 431
MalI GATC 2 cut(s) 476, 522
MboI GATC 2 cut(s) 474, 520
MboII GAAGA 3 cut(s) 74, 436, 797
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 9 cut(s) 251, 303, 385, 496, 532, 592, 632, 696, 739
MlyI GAGTC 3 cut(s) 40, 53, 195
MroXI GAANNNNTTC 2 cut(s) 100, 386
MseI TTAA 3 cut(s) 591, 668, 738
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 326, 379
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 163, 399
MvaI CCWGG 2 cut(s) 326, 379
NcoI CCATGG 1 cut(s) 469
NdeI CATATG 1 cut(s) 764
NdeII GATC 2 cut(s) 474, 520
NlaIII CATG 6 cut(s) 290, 359, 423, 473, 725, 778
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 423
PaeR7I CTCGAG 2 cut(s) 41, 509
PctI GAATGC 2 cut(s) 163, 399
PdmI GAANNNNTTC 2 cut(s) 100, 386
PfeI GAWTC 1 cut(s) 514
PfoI TCCNGGA 1 cut(s) 377
PkrI GCNGC 2 cut(s) 548, 650
PleI GAGTC 3 cut(s) 39, 52, 194
PpsI GAGTC 3 cut(s) 39, 52, 194
Psp6I CCWGG 2 cut(s) 324, 377
PspGI CCWGG 2 cut(s) 324, 377
PspPI GGNCC 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 41
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 591, 668, 738
SatI GCNGC 2 cut(s) 547, 649
Sau3AI GATC 2 cut(s) 474, 520
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 3 cut(s) 40, 53, 195
ScrFI CCNGG 2 cut(s) 326, 379
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 1 cut(s) 136
Sfr274I CTCGAG 2 cut(s) 41, 509
SinI GGWCC 1 cut(s) 265
SlaI CTCGAG 2 cut(s) 41, 509
SmlI CTYRAG 4 cut(s) 41, 190, 509, 667
SmoI CTYRAG 4 cut(s) 41, 190, 509, 667
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 9 cut(s) 251, 303, 385, 496, 532, 592, 632, 696, 739
SspMI CTAG 6 cut(s) 368, 396, 429, 662, 690, 711
StyD4I CCNGG 2 cut(s) 324, 377
StyI CCWWGG 2 cut(s) 469, 482
TaqI TCGA 2 cut(s) 42, 510
TasI AATT 9 cut(s) 251, 303, 385, 496, 532, 592, 632, 696, 739
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 591, 668, 738
Tru9I TTAA 3 cut(s) 591, 668, 738
TscAI CASTG 2 cut(s) 563, 591
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 546, 648
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 5 cut(s) 74, 525, 587, 645, 738
TspRI CASTG 2 cut(s) 563, 591
Vha464I CTTAAG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 632
XbaI TCTAGA 2 cut(s) 367, 661
XceI RCATGY 1 cut(s) 423
XhoI CTCGAG 2 cut(s) 41, 509
XmnI GAANNNNTTC 2 cut(s) 100, 386
XspI CTAG 6 cut(s) 368, 396, 429, 662, 690, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.