Rroxscaffold_6G00416660

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016941
Physical Location & Seq
Reverse (-)
38609157 .. 38610295
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416660.1

Sequence Viewer

Length: 405 bp
ATGGGAGTATTAATGGGAAATGTGGCCTTTAGCGTCATACTCCGTGATCTTTGCTGTGAATCACAGCCGTTTGTTTCAGTGTCAACACCTTGGCCTTGGCTTGGTCTTGGCAGGCCACAGGACTTGCACTGCAAGAAAGACAAGAGTCTGGCCGGCAACCTGGAAGGGCTAATACCCATGTCTATCTTTAATCTCAGAGGACTTGAAGAACTTTCCCTTAATTCAAAAAATCTCAATGGCTCATTTCCTTTTAATCGTCTTCACCAGCTGAAAAATCTTCGGCTTCTTCATCTCTCATACAATAGCTTGCTTCTTAGTTATAAACCTACCAATTTCTCATATTCATCCTTTCCTCAGTTCGAACAATTGAGGTTGGCTTCAGGGAAATTTGAGAAAATTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

134

Amino Acids

15.16

Weight (kDa)

9.33

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 386, 396
AcuI CTGAAG 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 206, 225
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 268, 306
AluI AGCT 2 cut(s) 268, 306
AoxI GGCC 4 cut(s) 24, 92, 113, 150
ApoI RAATTY 2 cut(s) 386, 396
AseI ATTAAT 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 360
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 89, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 89, 95
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 208, 368
BshFI GGCC 4 cut(s) 26, 94, 115, 152
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 4 cut(s) 26, 94, 115, 152
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 4 cut(s) 26, 94, 115, 152
BspCNI CTCAG 2 cut(s) 207, 367
BspT104I TTCGAA 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 89, 95
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 89, 95
Bst2UI CCWGG 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 113, 154, 308
BstDEI CTNAG 3 cut(s) 194, 314, 354
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 161
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 4 cut(s) 26, 94, 115, 152
BtsCI GGATG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 84, 127
Cac8I GCNNGC 3 cut(s) 113, 154, 308
Cfr10I RCCGGY 1 cut(s) 152
CseI GACGC 1 cut(s) 22
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 1 cut(s) 178
DdeI CTNAG 3 cut(s) 194, 314, 354
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 89, 95
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 89, 95
ErhI CCWWGG 2 cut(s) 89, 95
FaeI CATG 1 cut(s) 181
FaiI YATR 5 cut(s) 38, 179, 298, 321, 340
FatI CATG 1 cut(s) 177
FokI GGATG 1 cut(s) 331
HaeIII GGCC 4 cut(s) 26, 94, 115, 152
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 59, 145
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 127, 132
HpyF3I CTNAG 3 cut(s) 194, 314, 354
Hsp92II CATG 1 cut(s) 181
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 97, 104, 134, 146, 166, 173, 278, 366
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 218, 251, 269, 278
MfeI CAATTG 1 cut(s) 365
MluCI AATT 5 cut(s) 220, 331, 365, 386, 396
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 3 cut(s) 191, 363, 363
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 4 cut(s) 11, 189, 219, 252
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 161
NaeI GCCGGC 1 cut(s) 154
NdeII GATC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 181
NspV TTCGAA 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 59
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PshAI GACNNNNGTC 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 11
PsiI TTATAA 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 268
SaqAI TTAA 4 cut(s) 11, 189, 219, 252
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 161
SetI ASST 6 cut(s) 91, 162, 270, 308, 328, 374
SfuI TTCGAA 1 cut(s) 360
Sse9I AATT 5 cut(s) 220, 331, 365, 386, 396
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 2 cut(s) 89, 95
TaqI TCGA 1 cut(s) 360
TasI AATT 5 cut(s) 220, 331, 365, 386, 396
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 4 cut(s) 11, 189, 219, 252
Tru9I TTAA 4 cut(s) 11, 189, 219, 252
TscAI CASTG 2 cut(s) 84, 134
TspDTI ATGAA 2 cut(s) 278, 333
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 84, 134
VspI ATTAAT 1 cut(s) 11
XapI RAATTY 2 cut(s) 386, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.