Rh3AG121800

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016941
Physical Location & Seq
Forward (+)
10444988 .. 10445632
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG121800.1

Sequence Viewer

Length: 645 bp
ATGGCAGGTATATCGATTTGGGGGCTCAGTAAACTCTACATTCTAAATCTTTTTTCCAACTCCCTGAACCTCTTAGAAGGTCCTTTACTGAATCCAATGCCTTGTAATCTACGTGTGCTTGACCTTCATTCTAATCAGCTCCAGGGGAAAATCCCAGTTCTCTCATCACCTCATGTTCTGGCTCTAGATTACTCCAGGAATAATTTCAGCTCTAGCATTCCGGCTGACATTGGTGCATGTTTCACTAGTGACACTATATTCTTCTCTGTTGCAAGCAATAACCTCCATGGGATCATTCCAAGGTCAATATGCAATTCACAATCTCTCAAGATTCTTGATCTGTCCAATAATTCATTGAGCGGCAGCTTTCCTCAGTGCTTGACTACAATGAAACCTCTTGCAGTGCTTAATTTGAGGAGAAACAATCTTACAGATTATATTGCTGATAAATTTCCTCAAAGTTGCAGCTTACAAAGTCTAGACTTGAGTGGAAATCAGATACAATTAAGGACAATTTCCAAAATCTCTAGCCAACTGCATGAAGCTGGAGGTTTTAATTCTCGGAAACAATCAGTTAACAGATGCCTTTCCATGCTTTTTGAAGAACATATCTACTTTGCGTGTCCTTGCTTTGCAGTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

214

Amino Acids

23.57

Weight (kDa)

8.45

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 108 - 167 9.2e-11 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 360
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 1 cut(s) 602
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 2 cut(s) 141, 194
AluBI AGCT 5 cut(s) 139, 210, 366, 468, 545
AluI AGCT 5 cut(s) 139, 210, 366, 468, 545
AlwI GGATC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 363, 465
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
BbvI GCAGC 2 cut(s) 375, 477
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 143, 196
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 5 cut(s) 185, 213, 246, 479, 528
BisI GCNGC 3 cut(s) 361, 364, 466
BlsI GCNGC 3 cut(s) 362, 365, 467
Bme1390I CCNGG 2 cut(s) 143, 196
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 143, 196
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 3 cut(s) 125, 178, 567
BpuEI CTTGAG 2 cut(s) 311, 505
Bsa29I ATCGAT 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 142, 286, 299
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 143, 196
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 3 cut(s) 142, 286, 299
BseMII CTCAG 2 cut(s) 40, 386
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 430
BseXI GCAGC 2 cut(s) 375, 477
BshVI ATCGAT 1 cut(s) 14
BsiSI CCGG 1 cut(s) 221
BsmI GAATGC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 291, 337
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 39, 385
BspDI ATCGAT 1 cut(s) 14
BspPI GGATC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 142, 286, 299
BssMI GATC 2 cut(s) 291, 337
BssT1I CCWWGG 2 cut(s) 286, 299
Bst2UI CCWGG 2 cut(s) 143, 196
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 3 cut(s) 26, 73, 372
BstDSI CCRYGG 1 cut(s) 286
BstKTI GATC 2 cut(s) 294, 340
BstMBI GATC 2 cut(s) 291, 337
BstNI CCWGG 2 cut(s) 143, 196
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 141, 194
BstV1I GCAGC 2 cut(s) 375, 477
Bsu15I ATCGAT 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 380, 408
Cac8I GCNNGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 5 cut(s) 173, 237, 287, 539, 592
CviJI RGCY 9 cut(s) 25, 139, 182, 210, 224, 366, 468, 531, 545
CviKI_1 RGCY 9 cut(s) 25, 139, 182, 210, 224, 366, 468, 531, 545
DdeI CTNAG 3 cut(s) 26, 73, 372
DpnI GATC 2 cut(s) 293, 339
DpnII GATC 2 cut(s) 291, 337
Eco130I CCWWGG 2 cut(s) 286, 299
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 141, 194
EcoT14I CCWWGG 2 cut(s) 286, 299
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 286, 299
FaeI CATG 5 cut(s) 176, 240, 290, 542, 595
FatI CATG 5 cut(s) 172, 236, 286, 538, 591
Fnu4HI GCNGC 3 cut(s) 361, 364, 466
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 361, 364, 466
FspBI CTAG 5 cut(s) 185, 213, 246, 479, 528
GluI GCNGC 3 cut(s) 361, 364, 466
GsuI CTGGAG 3 cut(s) 125, 178, 567
HapII CCGG 1 cut(s) 221
Hin1II CATG 5 cut(s) 176, 240, 290, 542, 595
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 91, 331
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 2 cut(s) 32, 577
Hpy188I TCNGA 2 cut(s) 498, 564
Hpy188III TCNNGA 4 cut(s) 185, 328, 335, 479
Hpy8I GTNNAC 2 cut(s) 32, 577
HpyAV CCTTC 2 cut(s) 71, 134
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 7 cut(s) 236, 272, 312, 401, 465, 538, 635
HpyF3I CTNAG 3 cut(s) 26, 73, 372
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 5 cut(s) 176, 240, 290, 542, 595
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 2 cut(s) 291, 337
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 9 cut(s) 77, 128, 155, 164, 168, 181, 208, 234, 531
Lsp1109I GCAGC 2 cut(s) 375, 477
LweI GCATC 1 cut(s) 572
MaeI CTAG 5 cut(s) 185, 213, 246, 479, 528
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 293, 339
MbiI CCGCTC 1 cut(s) 360
MboI GATC 2 cut(s) 291, 337
MboII GAAGA 2 cut(s) 253, 614
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 8 cut(s) 202, 313, 349, 409, 449, 503, 513, 556
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 8 cut(s) 80, 180, 293, 381, 405, 408, 465, 542
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 4 cut(s) 408, 506, 555, 576
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 143, 196
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 143, 196
NcoI CCATGG 1 cut(s) 286
NdeII GATC 2 cut(s) 291, 337
NlaIII CATG 5 cut(s) 176, 240, 290, 542, 595
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 240
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 91, 331
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 3 cut(s) 362, 365, 467
Ppu21I YACGTR 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 141, 194
PspGI CCWGG 2 cut(s) 141, 194
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
SaqAI TTAA 4 cut(s) 408, 506, 555, 576
SatI GCNGC 3 cut(s) 361, 364, 466
Sau3AI GATC 2 cut(s) 291, 337
Sau96I GGNCC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 143, 196
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 572
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 326, 484
SmoI CTYRAG 2 cut(s) 326, 484
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 8 cut(s) 202, 313, 349, 409, 449, 503, 513, 556
SsiI CCGC 1 cut(s) 360
SspMI CTAG 5 cut(s) 185, 213, 246, 479, 528
StyD4I CCNGG 2 cut(s) 141, 194
StyI CCWWGG 2 cut(s) 286, 299
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 14
TasI AATT 8 cut(s) 202, 313, 349, 409, 449, 503, 513, 556
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 2 cut(s) 91, 331
Tru1I TTAA 4 cut(s) 408, 506, 555, 576
Tru9I TTAA 4 cut(s) 408, 506, 555, 576
TscAI CASTG 2 cut(s) 380, 408
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 363, 465
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 116, 342, 404, 555
TspRI CASTG 2 cut(s) 380, 408
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 449
XbaI TCTAGA 2 cut(s) 184, 478
XceI RCATGY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 5 cut(s) 185, 213, 246, 479, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.