Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001053.1

Orthogroup ID

OG0016941

Physical Location & Seq

Genomic Coordinates Reverse (-)

61956 .. 64116

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001053.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgaaaccgttcctccagttcttctttttcttgatcattgcagttcaaagactgcagggtaaggaagcccagcaactatcattgctccatttcaagaatagccttgtatacaattcttctatatcctccaagcttatttcttggaattcaagtaccgactgttgttcttgggtcggtgttacttgcagcactgttgggattgtcctcggtctggacctcagccgcgaaggtatctccattggaattgaaaattccagcaatctcgttgatcttcaacatcttcaaagcctcaatttggcctttaacgacttggttggggtatttccaaaagagttctttcagagtcttgaggttggcttcagggaagttgagaagtccattcccatagtttttgagaaatcaatccaaattggagcatttggacctctaagacacctacatacatggcaagatatacccaattggatttgggggctcagtaaactctacattctaaatctttcttccaactccctgaacctcttagaaggtcctttactgaatccaatgccttgtagtctacgcgtgcttgaccttcattctaatcagctccaggggaaaatcccagttctctcatcacctcatgttctggctctagattactccaggaataatttcagctctagcattccggctgacattggtgcatgtttcactagtgacactatattcttctctgttgcaagcaatgacctccatgagatcattccaaggtcaatatgcaattcacaacctctcgagattcttgatctgtccaatgattcattgagcggcagctttcctcacttacaaagtctagacttaagtggaaatcagatacaaggacaatttccaaaatctctagccaactgcatgaagctggaggttttaattctcggaaacaatcagataacagatgcctttccatgctttttgaagaacatatctactttgcgtgtccttgctttgcagtccaataagttttatgggcacattggatgtcccaagactaatggcacttggccaatgcttcagatcatagatttagctaacaacaattttgatggtgaaataccaggatcatctttgtcgacctggcaggcaatgatggctaacaaagatgatgctgcatcaaagctcaatcaccttcaatttcacaaccagtattttcatcaggttaattatcaggatgcaattactgtgactagcaaaggcatagatatggagttggtaaagattctaaccgtcttcacctcaattgacttctcatgcaacaagttcatgtcatctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

437

Amino Acids

48.6

Weight (kDa)

5.81

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016941)

Species	Orthologous Gene IDs
malus_domestica	MD12G1153000.v1.1 MD12G1173900.v1.1 MD12G1174300.v1.1
rosa_chinensis	RchiOBHm_Chr3g0463321 RchiOBHm_Chr3g0463361 RchiOBHm_Chr3g0463371
rosa_laevigata	RLG00000024790
rosa_multiflora	Rmu_sc0000923.1_g000004 Rmu_sc0001053.1_g000016
rosa_roxburghii	Rroxscaffold_6G00416610 Rroxscaffold_6G00416660
rosa_samantha	Rh3AG121800 Rh3CG128200 Rh3CG128400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	810
AccI	GTMKAC	3 cut(s)	108, 559, 1109
AccII	CGCG	2 cut(s)	225, 564
AciI	CCGC	2 cut(s)	223, 810
AclWI	GGATC	1 cut(s)	1105
AcoI	YGGCCR	1 cut(s)	1040
AcsI	RAATTY	2 cut(s)	145, 250
AcuI	CTGAAG	2 cut(s)	343, 1034
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	211, 295
AflII	CTTAAG	1 cut(s)	841
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	8 cut(s)	47, 94, 150, 248, 275, 284, 955, 1169
AhlI	ACTAGT	1 cut(s)	695
AjnI	CCWGG	4 cut(s)	591, 644, 1093, 1112
AluBI	AGCT	7 cut(s)	133, 589, 660, 816, 898, 1067, 1156
AluI	AGCT	7 cut(s)	133, 589, 660, 816, 898, 1067, 1156
AlwI	GGATC	1 cut(s)	1105
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	297, 1040
ApeKI	GCWGC	3 cut(s)	186, 813, 1145
ApoI	RAATTY	2 cut(s)	145, 250
Asp700I	GAANNNNTTC	2 cut(s)	8, 653
AspS9I	GGNCC	3 cut(s)	214, 422, 530
AsuHPI	GGTGA	4 cut(s)	609, 1097, 1154, 1261
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	3 cut(s)	214, 422, 530
BaeGI	GKGCMC	1 cut(s)	1011
BalI	TGGCCA	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbsI	GAAGAC	1 cut(s)	1258
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	198, 825, 1132
BccI	CCATC	2 cut(s)	1076, 1120
BciT130I	CCWGG	4 cut(s)	593, 646, 1095, 1114
BclI	TGATCA	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	6 cut(s)	635, 663, 696, 836, 881, 1224
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	841
BisI	GCNGC	5 cut(s)	187, 223, 811, 814, 1146
BlsI	GCNGC	5 cut(s)	188, 224, 812, 815, 1147
Bme1390I	CCNGG	4 cut(s)	593, 646, 1095, 1114
Bme18I	GGWCC	3 cut(s)	214, 422, 530
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	3 cut(s)	214, 422, 530
BmrFI	CCNGG	4 cut(s)	593, 646, 1095, 1114
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	4 cut(s)	925, 1132, 1157, 1198
BmuI	ACTGGG	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	1258
BpmI	CTGGAG	3 cut(s)	575, 628, 920
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	205, 592, 749
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 295
Bse1I	ACTGG	3 cut(s)	16, 605, 1180
Bse3DI	GCAATG	4 cut(s)	36, 80, 733, 1128
BseBI	CCWGG	4 cut(s)	593, 646, 1095, 1114
BseDI	CCNNGG	3 cut(s)	205, 592, 749
BseGI	GGATG	2 cut(s)	1022, 1213
BseLI	CCNNNNNNNGG	2 cut(s)	211, 295
BseMI	GCAATG	4 cut(s)	36, 80, 733, 1128
BseMII	CTCAG	2 cut(s)	232, 490
BseNI	ACTGG	3 cut(s)	16, 605, 1180
BseSI	GKGCMC	1 cut(s)	1011
BseXI	GCAGC	3 cut(s)	198, 825, 1132
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	225, 564
BshFI	GGCC	2 cut(s)	299, 1042
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	1005
BslI	CCNNNNNNNGG	2 cut(s)	211, 295
BsmFI	GGGAC	1 cut(s)	1005
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	299, 1042
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	477, 1011
Bsp143I	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
BspACI	CCGC	2 cut(s)	223, 810
BspANI	GGCC	2 cut(s)	299, 1042
BspCNI	CTCAG	2 cut(s)	231, 489
BspFNI	CGCG	2 cut(s)	225, 564
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	1105
BspTI	CTTAAG	1 cut(s)	841
BsrBI	CCGCTC	1 cut(s)	810
BsrDI	GCAATG	4 cut(s)	36, 80, 733, 1128
BsrI	ACTGG	3 cut(s)	16, 605, 1180
BssECI	CCNNGG	3 cut(s)	205, 592, 749
BssMI	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
BssNAI	GTATAC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	749
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	4 cut(s)	593, 646, 1095, 1114
Bst4CI	ACNGT	5 cut(s)	9, 161, 193, 1219, 1264
BstAFI	CTTAAG	1 cut(s)	841
BstC8I	GCNNGC	3 cut(s)	566, 724, 1119
BstDEI	CTNAG	4 cut(s)	218, 428, 476, 523
BstF5I	GGATG	2 cut(s)	1022, 1213
BstFNI	CGCG	2 cut(s)	225, 564
BstKTI	GATC	6 cut(s)	36, 271, 744, 790, 1056, 1100
BstMBI	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
BstMWI	GCNNNNNNNGC	1 cut(s)	1127
BstNI	CCWGG	4 cut(s)	593, 646, 1095, 1114
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	4 cut(s)	591, 644, 1093, 1112
BstSFI	CTRYAG	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	1011
BstUI	CGCG	2 cut(s)	225, 564
BstV1I	GCAGC	3 cut(s)	198, 825, 1132
BstV2I	GAAGAC	1 cut(s)	1258
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	299, 1042
BtsCI	GGATG	2 cut(s)	1022, 1213
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	566, 724, 1119
Cfr13I	GGNCC	3 cut(s)	214, 422, 530
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	8 cut(s)	444, 623, 687, 737, 892, 945, 1287, 1300
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	218, 428, 476, 523
DpnI	GATC	6 cut(s)	35, 270, 743, 789, 1055, 1099
DpnII	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
EaeI	YGGCCR	1 cut(s)	1040
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	214, 422, 530
Eco57I	CTGAAG	2 cut(s)	343, 1034
Eco88I	CYCGRG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	4 cut(s)	591, 644, 1093, 1112
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	8 cut(s)	447, 626, 690, 740, 895, 948, 1290, 1303
FaqI	GGGAC	1 cut(s)	1005
FatI	CATG	8 cut(s)	443, 622, 686, 736, 891, 944, 1286, 1299
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	3 cut(s)	108, 559, 1109
Fnu4HI	GCNGC	5 cut(s)	187, 223, 811, 814, 1146
FokI	GGATG	2 cut(s)	1029, 1220
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	5 cut(s)	187, 223, 811, 814, 1146
FspBI	CTAG	6 cut(s)	635, 663, 696, 836, 881, 1224
GluI	GCNGC	5 cut(s)	187, 223, 811, 814, 1146
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	3 cut(s)	575, 628, 920
HaeIII	GGCC	2 cut(s)	299, 1042
HapII	CCGG	1 cut(s)	671
Hin1II	CATG	8 cut(s)	447, 626, 690, 740, 895, 948, 1290, 1303
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	5 cut(s)	343, 541, 781, 800, 1255
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	4 cut(s)	609, 1097, 1154, 1261
Hpy166II	GTNNAC	4 cut(s)	109, 482, 560, 1110
Hpy188I	TCNGA	5 cut(s)	342, 855, 917, 927, 1053
Hpy8I	GTNNAC	4 cut(s)	109, 482, 560, 1110
HpyAV	CCTTC	4 cut(s)	221, 521, 584, 1175
HpyCH4III	ACNGT	5 cut(s)	9, 161, 193, 1219, 1264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1127
HpyF3I	CTNAG	4 cut(s)	218, 428, 476, 523
Hsp92II	CATG	8 cut(s)	447, 626, 690, 740, 895, 948, 1290, 1303
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
LmnI	GCTCC	3 cut(s)	90, 413, 594
Lsp1109I	GCAGC	3 cut(s)	198, 825, 1132
LweI	GCATC	4 cut(s)	925, 1132, 1157, 1198
MaeI	CTAG	6 cut(s)	635, 663, 696, 836, 881, 1224
MaeIII	GTNAC	3 cut(s)	178, 698, 1219
MalI	GATC	6 cut(s)	35, 270, 743, 789, 1055, 1099
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
MboII	GAAGA	8 cut(s)	13, 108, 263, 272, 495, 703, 967, 1258
MfeI	CAATTG	2 cut(s)	460, 1275
MhlI	GDGCHC	2 cut(s)	477, 1011
MlsI	TGGCCA	1 cut(s)	1042
MluI	ACGCGT	1 cut(s)	562
MluNI	TGGCCA	1 cut(s)	1042
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	531
Mox20I	TGGCCA	1 cut(s)	1042
MroXI	GAANNNNTTC	2 cut(s)	8, 653
MscI	TGGCCA	1 cut(s)	1042
MseI	TTAA	4 cut(s)	303, 842, 908, 1197
MslI	CAYNNNNRTG	1 cut(s)	1238
Msp20I	TGGCCA	1 cut(s)	1042
MspCI	CTTAAG	1 cut(s)	841
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	4 cut(s)	593, 646, 1095, 1114
MunI	CAATTG	2 cut(s)	460, 1275
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	4 cut(s)	593, 646, 1095, 1114
MvnI	CGCG	2 cut(s)	225, 564
MwoI	GCNNNNNNNGC	1 cut(s)	1127
NdeII	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
NlaIII	CATG	8 cut(s)	447, 626, 690, 740, 895, 948, 1290, 1303
NmuCI	GTSAC	2 cut(s)	698, 1219
NspI	RCATGY	1 cut(s)	690
PaeR7I	CTCGAG	1 cut(s)	776
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	8, 653
PfeI	GAWTC	4 cut(s)	541, 781, 800, 1255
PfoI	TCCNGGA	1 cut(s)	644
PkrI	GCNGC	5 cut(s)	188, 224, 812, 815, 1147
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	4 cut(s)	591, 644, 1093, 1112
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	4 cut(s)	591, 644, 1093, 1112
PspPI	GGNCC	3 cut(s)	214, 422, 530
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	1238
SalI	GTCGAC	1 cut(s)	1108
SaqAI	TTAA	4 cut(s)	303, 842, 908, 1197
SatI	GCNGC	5 cut(s)	187, 223, 811, 814, 1146
Sau3AI	GATC	6 cut(s)	33, 268, 741, 787, 1053, 1097
Sau96I	GGNCC	3 cut(s)	214, 422, 530
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	4 cut(s)	593, 646, 1095, 1114
SduI	GDGCHC	2 cut(s)	477, 1011
SfaNI	GCATC	4 cut(s)	925, 1132, 1157, 1198
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	776
SinI	GGWCC	3 cut(s)	214, 422, 530
SlaI	CTCGAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	1238
SmlI	CTYRAG	3 cut(s)	347, 776, 841
SmoI	CTYRAG	3 cut(s)	347, 776, 841
SpeI	ACTAGT	1 cut(s)	695
SsiI	CCGC	2 cut(s)	223, 810
SspMI	CTAG	6 cut(s)	635, 663, 696, 836, 881, 1224
StyD4I	CCNGG	4 cut(s)	591, 644, 1093, 1112
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	5 cut(s)	9, 161, 193, 1219, 1264
TaqI	TCGA	2 cut(s)	777, 1109
TaqII	GACCGA	1 cut(s)	197
TauI	GCSGC	2 cut(s)	225, 813
TfiI	GAWTC	4 cut(s)	541, 781, 800, 1255
Tru1I	TTAA	4 cut(s)	303, 842, 908, 1197
Tru9I	TTAA	4 cut(s)	303, 842, 908, 1197
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	698, 1219
TseI	GCWGC	3 cut(s)	186, 813, 1145
Tsp45I	GTSAC	2 cut(s)	698, 1219
TspDTI	ATGAA	6 cut(s)	17, 566, 792, 908, 1178, 1288
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	841
VpaK11BI	GGWCC	3 cut(s)	214, 422, 530
XapI	RAATTY	2 cut(s)	145, 250
XbaI	TCTAGA	2 cut(s)	634, 835
XceI	RCATGY	1 cut(s)	690
XhoI	CTCGAG	1 cut(s)	776
XmiI	GTMKAC	3 cut(s)	108, 559, 1109
XmnI	GAANNNNTTC	2 cut(s)	8, 653
XspI	CTAG	6 cut(s)	635, 663, 696, 836, 881, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.