Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007584

Physical Location & Seq

Genomic Coordinates Forward (+)

12168528 .. 12169232

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATTTGGTTACAGAGCATATCCAAGCTTCAAGCAGCTTTGGTTACGGCCGAGGATAATCTTTCTACACTTCCATCTGAGCCACCCTATTGTGAGTTTGAATATGTATTACAAGGATTGGGTTTTGAGCGAGGTTGGGGAGACACTACAGCAAAGGTATTGGAGTTGATACATCTTCTCCGAGATATCGTAAAGGCTTCTGATCCTACTACCTTGAAGACATTTCTAGGGAAAGTACCAATGGTTTTTAATGATGTCATTTTGTCTCCACATGGATACTTTGGGCAAGAGAATGTCTTAGGCTTACCAGACACCGATGGGCAGGTTGTCTATATACTGGACCAAGTGTGTGCCCTCGAGAATGAAAGGCGCCAAAAAGTCACTGAAACTACATGCAACCAGCGGCTAGAAAGAGTCACTGGAACAGAGCACAGCCATATTCTGCGAGTTCCTTTCAGATCAGAGAATGGAATTCTTCGTAAATGGATATCAAGGTTTGATGTATGGTCTTATTTGGAGACCTTTGCTGAGGATGTTGCAGGTGAAACTACTGCTAAGTTACAGGGACATCCAGATTTTATTATTGGAAATTACAGTTATGGAAATCTTGTTGCATCTTTGTTGGCTTATAAAATGGGGGTTACACAGTGCACCATCGCGCATGCTTTGGAGAAAACAAAATATCCGGATTCAGATATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

5.15

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_EPBD	PF24862	4 - 48	2.5e-10	Sucrose synthase EPBD domain
GT-B_Sucrose_synth	PF00862	71 - 127	2.4e-22	Sucrose synthase first GT-B domain
GT-B_Sucrose_synth	PF00862	127 - 234	2.1e-51	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02280
fragaria_vesca	FvH4_2g26000 FvH4_2g26000
malus_domestica	MD11G1307000.v1.1
prunus_persica	Prupe.8G264300_v2.0.a1
pyrus_communis	pycom11g26860
rosa_chinensis	RchiOBHm_Chr3g0465391 RchiOBHm_Chr6g0294361
rosa_laevigata	RLG00000011877
rosa_multiflora	Rmu_co8254571.1_g000001 Rmu_sc0005369.1_g000012 Rmu_sc0016833.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173440
rosa_rugosa	Rorug03G0273600 Rorug06G0243800
rosa_samantha	Rh2AG100600 Rh3BG141500 Rh3CG142600 Rh3DG142600 Rh6AG356400 Rh6BG363100 Rh6CG370400 Rh6DG356900
rosa_wichuraiana	Rw6G031060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	2 cut(s)	313, 530
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	659
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	32, 101, 217
AluBI	AGCT	2 cut(s)	28, 38
AluI	AGCT	2 cut(s)	28, 38
Alw21I	GWGCWC	2 cut(s)	432, 653
Alw26I	GTCTC	3 cut(s)	135, 270, 512
Alw44I	GTGCAC	1 cut(s)	649
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	685
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	649
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	372, 661
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	355, 653
BanI	GGYRCC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	432, 653
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	3 cut(s)	82, 311, 662
BceAI	ACGGC	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	135, 270, 512
BfaI	CTAG	3 cut(s)	227, 407, 703
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	373
BfuAI	ACCTGC	2 cut(s)	313, 530
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	36, 404
BlsI	GCNGC	2 cut(s)	37, 405
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse1I	ACTGG	2 cut(s)	342, 424
BseAI	TCCGGA	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	538, 568
BseMII	CTCAG	2 cut(s)	69, 519
BseNI	ACTGG	2 cut(s)	342, 424
BseSI	GKGCMC	2 cut(s)	355, 653
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	432, 653
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	579
BsmAI	GTCTC	3 cut(s)	135, 270, 512
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	355, 432, 653
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	2 cut(s)	202, 458
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	70, 520
BspEI	TCCGGA	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	371
BspMI	ACCTGC	2 cut(s)	313, 530
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	342, 424
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	202, 458
BssNI	GRCGYC	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	596, 648
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	4 cut(s)	78, 298, 528, 555
BstF5I	GGATG	2 cut(s)	538, 568
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	372, 661
BstKTI	GATC	2 cut(s)	205, 461
BstMAI	GTCTC	3 cut(s)	135, 270, 512
BstMBI	GATC	2 cut(s)	202, 458
BstMCI	CGRYCG	1 cut(s)	51
BstNSI	RCATGY	2 cut(s)	396, 665
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	2 cut(s)	355, 653
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	224
BstZI	CGGCCG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	538, 568
BtsIMutI	CAGTG	3 cut(s)	381, 417, 653
BveI	ACCTGC	2 cut(s)	313, 530
Cac8I	GCNNGC	1 cut(s)	663
CfoI	GCGC	2 cut(s)	372, 661
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	3 cut(s)	272, 393, 662
CviJI	RGCY	9 cut(s)	28, 38, 50, 82, 197, 303, 406, 435, 626
CviKI_1	RGCY	9 cut(s)	28, 38, 50, 82, 197, 303, 406, 435, 626
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	4 cut(s)	78, 298, 528, 555
DinI	GGCGCC	1 cut(s)	371
DpnI	GATC	2 cut(s)	204, 460
DpnII	GATC	2 cut(s)	202, 458
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	512
Eco32I	GATATC	3 cut(s)	187, 489, 697
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	471
EcoRV	GATATC	3 cut(s)	187, 489, 697
EgeI	GGCGCC	1 cut(s)	371
EheI	GGCGCC	1 cut(s)	371
FaeI	CATG	3 cut(s)	275, 396, 665
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	3 cut(s)	271, 392, 661
Fnu4HI	GCNGC	2 cut(s)	36, 404
FokI	GGATG	2 cut(s)	545, 555
Fsp4HI	GCNGC	2 cut(s)	36, 404
FspBI	CTAG	3 cut(s)	227, 407, 703
GlaI	GCGC	2 cut(s)	371, 660
GluI	GCNGC	2 cut(s)	36, 404
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	2 cut(s)	372, 661
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	275, 396, 665
Hin6I	GCGC	2 cut(s)	370, 659
HinP1I	GCGC	2 cut(s)	370, 659
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	414, 689
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	6 cut(s)	79, 182, 202, 458, 463, 694
Hpy188III	TCNNGA	3 cut(s)	358, 572, 686
Hpy8I	GTNNAC	1 cut(s)	651
HpyCH4III	ACNGT	2 cut(s)	596, 648
HpyCH4V	TGCA	4 cut(s)	396, 539, 614, 651
HpyF3I	CTNAG	4 cut(s)	78, 298, 528, 555
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	275, 396, 665
HspAI	GCGC	2 cut(s)	370, 659
KasI	GGCGCC	1 cut(s)	369
Kpn2I	TCCGGA	1 cut(s)	685
Kzo9I	GATC	2 cut(s)	202, 458
LpnPI	CCDG	9 cut(s)	308, 321, 323, 405, 413, 525, 548, 585, 699
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	623
MaeI	CTAG	3 cut(s)	227, 407, 703
MaeIII	GTNAC	6 cut(s)	9, 43, 379, 415, 558, 640
MalI	GATC	2 cut(s)	204, 460
MboI	GATC	2 cut(s)	202, 458
MboII	GAAGA	3 cut(s)	167, 229, 467
MhlI	GDGCHC	3 cut(s)	355, 432, 653
MluCI	AATT	2 cut(s)	471, 589
Mly113I	GGCGCC	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	423
MnlI	CCTC	4 cut(s)	46, 125, 365, 523
MroI	TCCGGA	1 cut(s)	685
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	659
NarI	GGCGCC	1 cut(s)	370
NdeII	GATC	2 cut(s)	202, 458
NlaIII	CATG	3 cut(s)	275, 396, 665
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	379, 415
NspI	RCATGY	2 cut(s)	396, 665
PaeI	GCATGC	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	356
PaqCI	CACCTGC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	37, 405
PleI	GAGTC	1 cut(s)	422
PluTI	GGCGCC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	340
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	36, 404
Sau3AI	GATC	2 cut(s)	202, 458
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	423
SduI	GDGCHC	3 cut(s)	355, 432, 653
SetI	ASST	9 cut(s)	30, 40, 136, 159, 215, 327, 497, 524, 544
SfaNI	GCATC	1 cut(s)	623
SfcI	CTRYAG	1 cut(s)	147
SfoI	GGCGCC	1 cut(s)	371
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	2 cut(s)	471, 589
SsiI	CCGC	1 cut(s)	403
SspDI	GGCGCC	1 cut(s)	369
SspMI	CTAG	3 cut(s)	227, 407, 703
TaaI	ACNGT	2 cut(s)	596, 648
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	471, 589
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	3 cut(s)	388, 424, 653
TseFI	GTSAC	2 cut(s)	379, 415
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	379, 415
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	3 cut(s)	388, 424, 653
VneI	GTGCAC	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	2 cut(s)	396, 665
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	3 cut(s)	227, 407, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.