Rorug03G0273600

Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
27026920 .. 27029489
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0273600.1

Sequence Viewer

Length: 1605 bp
ATGGTCTACCTCAAACTTTGCTTGATTTTATTCATGGGTTGTGTACCAGATACAACCAACCTCTGTTCCAACCAATTTCTGGCCACCCCAACCATTATTCCATACCGCTTAGATCCCTCTCATATCACTTCACCTTTTCAAACACTAAGCCTTGATGGTTACTTGAGTTTTGACAACAACCATCATACAGCAAAGGACTTTGGCAACATATACCATTTCCAACCATCAGCAGTACTATATCCAAAATCTGTTTCTGATATCTCCTGCATAATAAAGCTTATATTTGAAATGGGTTCTGGTTCTGAGCTTACAGTTGCTGCCAGAGGACATGGTCACTCCCTTCAAGGTCAAGCTCAAGCTCATCGAGGCATAGTCATCAGCATGGAATCACTTAAGGGATCTCCAAAAATGCAGGTTCATATTGGAAAGCGACCTTATGTGGATGTTTCGGGTGGTGAGTTATGGATAAATATTCTGCATGAGACACTCAAACATGGGTTGGCACCAAAATCTTGGACAGATTACCTTCACCTCACCGTTGGCGGGACTTTGTCAAATGCCGGAATCAGTGGTCAGGCATTCCGGCATGGACCCCAGATCAACAATGTCTATCAGCTGGAGGTTGTCACAGGAAAAGGAGACATAATTACCTGTTCCGTAAAGAAAAATGCAGACCTTTTCTATGCTGTTCTGGGAGGGCTGGGACAGTTTGGCATCATTACAAAGGCTAGAATTTCTCTTCAATCGGCACCAAAGATGGTTAAGTGGATCAGAGTGCTGTACTCAGACTTCTCATTATTTTCAAAGGACCAAGAGCTTCTCATATCATCTGCAAATTCATTTGACTATATTGAAGGATTTGTTATAATTAACAGAACAGGTCTTCTTAATAGCTGGAGGTCTTCCTTCAATCCTAAAGATCCAATTCAAGCGAGCCAATTTAGCTCTGATGGTAAAACACTCTACTGCCTAGAAATGGCCAAATACTATAACCCAGAAGAAACTGATGTCATGGATCAGAGAACTGAGATCTTACTGTCAGGATTACAATATATCCCATCCACCCTCTTCACGTCAGAAGTTTCCTTTGTAAACTTCCTAGATAGAGTACATTTGTCTGAGAGAAAACTACGAGAAAAAGGATTATGGGATGTTCCCCACCCGTGGATAAACCTTCTCATCCCTAAAAGCAAGATACATGAGTTTGCTGAAGAGGTCTTTGGCAACATTCTCACAGACAATATCAATGGTCCTATCCTCATGTACCCAGTCAACAAAACCAAGTGGAACAACAACACATCTTTGGTTACCCCAGATGAAGATGTATTCTACCTAGTTGCATTCTTGTCCTCTGTGGTGCCATCTTCCGCAGGAACAGATGGCTTTGACAAAATTTTAACACTAAACAGAAGAATCTTACAGTACTCTGCTACAGCTAACCTGGGTATCAAGCAATATCTGCCCCATTACAGAACCCAAGGAGAGTGGCGAGCTCATTTTGGCTCTCGATGGAAAGTTTTCCTACAGAGGAAGTCTTCTTATGACCCTTTGGCAATCCTTGCTCCTGGGCAGAGAATCTTTAAAAAGGCGGCTCCCATCCTATGA

Protein Analysis

534

Amino Acids

59.86

Weight (kDa)

8.76

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 75 - 219 5e-18 FAD binding domain
Cytokin-bind PF09265 251 - 527 3.2e-115 Cytokinin dehydrogenase 1, FAD and cytokinin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 3 cut(s) 502, 748, 1357
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 6
AciI CCGC 4 cut(s) 106, 543, 1368, 1589
AclWI GGATC 5 cut(s) 107, 406, 776, 914, 1023
AcoI YGGCCR 2 cut(s) 81, 978
AcsI RAATTY 3 cut(s) 732, 835, 1392
AcuI CTGAAG 1 cut(s) 1230
AfaI GTAC 6 cut(s) 45, 234, 782, 1110, 1265, 1424
AfiI CCNNNNNNNGG 4 cut(s) 79, 543, 976, 1164
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 8 cut(s) 140, 287, 344, 743, 804, 854, 910, 929
AjiI CACGTC 1 cut(s) 1074
AjnI CCWGG 2 cut(s) 1440, 1564
AjuI GAANNNNNNNTTGG 4 cut(s) 235, 267, 1203, 1235
Alw21I GWGCWC 1 cut(s) 1495
Alw26I GTCTC 2 cut(s) 476, 633
AlwI GGATC 5 cut(s) 107, 406, 776, 914, 1023
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 81, 978
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 3 cut(s) 732, 835, 1392
Asp700I GAANNNNTTC 1 cut(s) 1517
AspS9I GGNCC 3 cut(s) 590, 808, 1250
AsuHPI GGTGA 4 cut(s) 123, 467, 521, 526
AvaII GGWCC 3 cut(s) 590, 808, 1250
BaeI ACNNNNGTAYC 4 cut(s) 1187, 1220, 1429, 1462
BalI TGGCCA 2 cut(s) 83, 980
BanI GGYRCC 3 cut(s) 502, 748, 1357
BanII GRGCYC 1 cut(s) 1495
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
BbsI GAAGAC 3 cut(s) 875, 894, 1527
Bbv12I GWGCWC 1 cut(s) 1495
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 1442, 1566
BcoDI GTCTC 2 cut(s) 476, 633
BfaI CTAG 4 cut(s) 729, 971, 1100, 1334
BfmI CTRYAG 2 cut(s) 1431, 1523
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 2 cut(s) 318, 1590
BlsI GCNGC 2 cut(s) 319, 1591
BmcAI AGTACT 2 cut(s) 234, 1424
Bme1390I CCNGG 2 cut(s) 1442, 1566
Bme18I GGWCC 3 cut(s) 590, 808, 1250
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 3 cut(s) 590, 808, 1250
BmiI GGNNCC 5 cut(s) 504, 592, 750, 1359, 1593
BmrFI CCNGG 2 cut(s) 1442, 1566
BmrI ACTGGG 1 cut(s) 1262
BmsI GCATC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 1262
BpiI GAAGAC 3 cut(s) 875, 894, 1527
BpmI CTGGAG 2 cut(s) 638, 916
BpuEI CTTGAG 2 cut(s) 184, 339
BsaJI CCNNGG 4 cut(s) 1163, 1441, 1477, 1565
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 543, 976, 1164
Bse1I ACTGG 1 cut(s) 1268
BseBI CCWGG 2 cut(s) 1442, 1566
BseDI CCNNGG 4 cut(s) 1163, 1441, 1477, 1565
BseGI GGATG 5 cut(s) 448, 1058, 1156, 1179, 1596
BseLI CCNNNNNNNGG 4 cut(s) 79, 543, 976, 1164
BseMII CTCAG 4 cut(s) 294, 798, 1017, 1110
BseNI ACTGG 1 cut(s) 1268
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 2 cut(s) 83, 980
BshNI GGYRCC 3 cut(s) 502, 748, 1357
BsiHKAI GWGCWC 1 cut(s) 1495
BsiSI CCGG 2 cut(s) 561, 583
BslFI GGGAC 2 cut(s) 559, 717
BslI CCNNNNNNNGG 4 cut(s) 79, 543, 976, 1164
BsmAI GTCTC 2 cut(s) 476, 633
BsmFI GGGAC 2 cut(s) 559, 717
BsmI GAATGC 2 cut(s) 578, 1340
BsnI GGCC 2 cut(s) 83, 980
Bsp1286I GDGCHC 1 cut(s) 1495
Bsp143I GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
BspACI CCGC 4 cut(s) 106, 543, 1368, 1589
BspANI GGCC 2 cut(s) 83, 980
BspCNI CTCAG 4 cut(s) 295, 797, 1018, 1111
BspLI GGNNCC 5 cut(s) 504, 592, 750, 1359, 1593
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 5 cut(s) 107, 406, 776, 914, 1023
BspT107I GGYRCC 3 cut(s) 502, 748, 1357
BspTI CTTAAG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 1268
BssECI CCNNGG 4 cut(s) 1163, 1441, 1477, 1565
BssMI GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
BssT1I CCWWGG 1 cut(s) 1477
Bst2UI CCWGG 2 cut(s) 1442, 1566
Bst4CI ACNGT 5 cut(s) 313, 538, 708, 1038, 1422
Bst6I CTCTTC 3 cut(s) 744, 1073, 1206
BstAFI CTTAAG 1 cut(s) 392
BstAPI GCANNNNNTGC 2 cut(s) 1459, 1559
BstC8I GCNNGC 2 cut(s) 934, 1491
BstDEI CTNAG 6 cut(s) 109, 146, 303, 784, 1026, 1119
BstDSI CCRYGG 1 cut(s) 1163
BstEII GGTNACC 1 cut(s) 1306
BstF5I GGATG 5 cut(s) 448, 1058, 1156, 1179, 1596
BstKTI GATC 7 cut(s) 115, 401, 600, 771, 922, 1018, 1032
BstMAI GTCTC 2 cut(s) 476, 633
BstMBI GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 942, 1459, 1559
BstNI CCWGG 2 cut(s) 1442, 1566
BstPI GGTNACC 1 cut(s) 1306
BstSCI CCNGG 2 cut(s) 1440, 1564
BstSFI CTRYAG 2 cut(s) 1431, 1523
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 3 cut(s) 875, 894, 1527
BstX2I RGATCY 4 cut(s) 112, 398, 919, 1029
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 4 cut(s) 112, 398, 919, 1029
BsuRI GGCC 2 cut(s) 83, 980
BtgI CCRYGG 1 cut(s) 1163
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 5 cut(s) 448, 1058, 1156, 1179, 1596
BtsIMutI CAGTG 1 cut(s) 574
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 934, 1491
CaiI CAGNNNCTG 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 590, 808, 1250
Csp6I GTAC 6 cut(s) 44, 233, 781, 1109, 1264, 1423
CspCI CAANNNNNGTGG 2 cut(s) 1466, 1501
CviAII CATG 9 cut(s) 34, 329, 382, 479, 494, 587, 1012, 1199, 1261
CviQI GTAC 6 cut(s) 44, 233, 781, 1109, 1264, 1423
DdeI CTNAG 6 cut(s) 109, 146, 303, 784, 1026, 1119
DpnI GATC 7 cut(s) 114, 400, 599, 770, 921, 1017, 1031
DpnII GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
DraI TTTAAA 1 cut(s) 1582
EaeI YGGCCR 2 cut(s) 81, 978
Eam1104I CTCTTC 3 cut(s) 744, 1073, 1206
EarI CTCTTC 3 cut(s) 744, 1073, 1206
Ecl136II GAGCTC 1 cut(s) 1493
Eco130I CCWWGG 1 cut(s) 1477
Eco24I GRGCYC 1 cut(s) 1495
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 3 cut(s) 590, 808, 1250
Eco53kI GAGCTC 1 cut(s) 1493
Eco57I CTGAAG 1 cut(s) 1230
Eco91I GGTNACC 1 cut(s) 1306
EcoICRI GAGCTC 1 cut(s) 1493
EcoO65I GGTNACC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 1440, 1564
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 1477
EcoT38I GRGCYC 1 cut(s) 1495
ErhI CCWWGG 1 cut(s) 1477
FaeI CATG 9 cut(s) 37, 332, 385, 482, 497, 590, 1015, 1202, 1264
FaqI GGGAC 2 cut(s) 559, 717
FatI CATG 9 cut(s) 33, 328, 381, 478, 493, 586, 1011, 1198, 1260
FauI CCCGC 1 cut(s) 536
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 318, 1590
FokI GGATG 5 cut(s) 455, 1045, 1163, 1166, 1583
FriOI GRGCYC 1 cut(s) 1495
Fsp4HI GCNGC 2 cut(s) 318, 1590
FspBI CTAG 4 cut(s) 729, 971, 1100, 1334
GluI GCNGC 2 cut(s) 318, 1590
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 2 cut(s) 638, 916
HaeIII GGCC 2 cut(s) 83, 980
HapII CCGG 2 cut(s) 561, 583
Hin1II CATG 9 cut(s) 37, 332, 385, 482, 497, 590, 1015, 1202, 1264
HincII GTYRAC 1 cut(s) 1273
HindII GTYRAC 1 cut(s) 1273
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 386, 564, 1413, 1575
HpaII CCGG 2 cut(s) 561, 583
HphI GGTGA 4 cut(s) 123, 467, 521, 526
Hpy166II GTNNAC 4 cut(s) 7, 44, 1093, 1273
Hpy188I TCNGA 8 cut(s) 256, 304, 773, 787, 949, 1020, 1078, 1120
Hpy188III TCNNGA 2 cut(s) 1041, 1506
Hpy8I GTNNAC 4 cut(s) 7, 44, 1093, 1273
HpyAV CCTTC 5 cut(s) 350, 536, 848, 916, 1184
HpyCH4III ACNGT 5 cut(s) 313, 538, 708, 1038, 1422
HpyCH4IV ACGT 1 cut(s) 1073
HpyCH4V TGCA 6 cut(s) 267, 412, 478, 671, 833, 1340
HpyF10VI GCNNNNNNNGC 3 cut(s) 942, 1459, 1559
HpyF3I CTNAG 6 cut(s) 109, 146, 303, 784, 1026, 1119
HpySE526I ACGT 1 cut(s) 1073
Hsp92II CATG 9 cut(s) 37, 332, 385, 482, 497, 590, 1015, 1202, 1264
Kzo9I GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
LmnI GCTCC 2 cut(s) 1567, 1597
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 723
MaeI CTAG 4 cut(s) 729, 971, 1100, 1334
MaeII ACGT 1 cut(s) 1073
MaeIII GTNAC 4 cut(s) 158, 332, 625, 1306
MalI GATC 7 cut(s) 114, 400, 599, 770, 921, 1017, 1031
MboI GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
MflI RGATCY 4 cut(s) 112, 398, 919, 1029
MhlI GDGCHC 1 cut(s) 1495
MlsI TGGCCA 2 cut(s) 83, 980
MluCI AATT 8 cut(s) 74, 645, 732, 835, 867, 924, 938, 1392
MluNI TGGCCA 2 cut(s) 83, 980
MmeI TCCRAC 2 cut(s) 93, 244
Mox20I TGGCCA 2 cut(s) 83, 980
MroXI GAANNNNTTC 1 cut(s) 1517
MscI TGGCCA 2 cut(s) 83, 980
MseI TTAA 6 cut(s) 393, 762, 870, 888, 1397, 1581
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 2 cut(s) 83, 980
MspA1I CMGCKG 1 cut(s) 616
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 561, 583
MspR9I CCNGG 2 cut(s) 1442, 1566
Mva1269I GAATGC 2 cut(s) 578, 1340
MvaI CCWGG 2 cut(s) 1442, 1566
MwoI GCNNNNNNNGC 3 cut(s) 942, 1459, 1559
NdeII GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
NlaIII CATG 9 cut(s) 37, 332, 385, 482, 497, 590, 1015, 1202, 1264
NlaIV GGNNCC 5 cut(s) 504, 592, 750, 1359, 1593
NmuCI GTSAC 2 cut(s) 332, 625
PctI GAATGC 2 cut(s) 578, 1340
PdmI GAANNNNTTC 1 cut(s) 1517
PfeI GAWTC 4 cut(s) 386, 564, 1413, 1575
PflFI GACNNNGTC 2 cut(s) 330, 550
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 2 cut(s) 319, 1591
PsiI TTATAA 1 cut(s) 866
Psp124BI GAGCTC 1 cut(s) 1495
Psp6I CCWGG 2 cut(s) 1440, 1564
PspEI GGTNACC 1 cut(s) 1306
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 1440, 1564
PspN4I GGNNCC 5 cut(s) 504, 592, 750, 1359, 1593
PspPI GGNCC 3 cut(s) 590, 808, 1250
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 4 cut(s) 112, 398, 919, 1029
PsyI GACNNNGTC 2 cut(s) 330, 550
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 6 cut(s) 45, 234, 782, 1110, 1265, 1424
RsaNI GTAC 6 cut(s) 44, 233, 781, 1109, 1264, 1423
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 1495
SaqAI TTAA 6 cut(s) 393, 762, 870, 888, 1397, 1581
SatI GCNGC 2 cut(s) 318, 1590
Sau3AI GATC 7 cut(s) 112, 398, 597, 768, 919, 1015, 1029
Sau96I GGNCC 3 cut(s) 590, 808, 1250
ScaI AGTACT 2 cut(s) 234, 1424
ScrFI CCNGG 2 cut(s) 1442, 1566
SduI GDGCHC 1 cut(s) 1495
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 2 cut(s) 1431, 1523
SinI GGWCC 3 cut(s) 590, 808, 1250
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 3 cut(s) 163, 354, 392
SmoI CTYRAG 3 cut(s) 163, 354, 392
Sse9I AATT 8 cut(s) 74, 645, 732, 835, 867, 924, 938, 1392
SsiI CCGC 4 cut(s) 106, 543, 1368, 1589
SspI AATATT 1 cut(s) 472
SspMI CTAG 4 cut(s) 729, 971, 1100, 1334
SstI GAGCTC 1 cut(s) 1495
StyD4I CCNGG 2 cut(s) 1440, 1564
StyI CCWWGG 1 cut(s) 1477
TaaI ACNGT 5 cut(s) 313, 538, 708, 1038, 1422
TaiI ACGT 1 cut(s) 1076
TaqI TCGA 2 cut(s) 364, 1507
TasI AATT 8 cut(s) 74, 645, 732, 835, 867, 924, 938, 1392
TatI WGTACW 4 cut(s) 232, 780, 1108, 1422
TauI GCSGC 1 cut(s) 1592
TfiI GAWTC 4 cut(s) 386, 564, 1413, 1575
Tru1I TTAA 6 cut(s) 393, 762, 870, 888, 1397, 1581
Tru9I TTAA 6 cut(s) 393, 762, 870, 888, 1397, 1581
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 2 cut(s) 332, 625
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 332, 625
TspDTI ATGAA 4 cut(s) 22, 407, 828, 1332
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 2 cut(s) 330, 550
Van91I CCANNNNNTGG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 590, 808, 1250
XapI RAATTY 3 cut(s) 732, 835, 1392
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 1517
XspI CTAG 4 cut(s) 729, 971, 1100, 1334
ZrmI AGTACT 2 cut(s) 234, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.