Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Reverse (-)

11360051 .. 11362548

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGTCGCAATCGGATCACATGGCCGCGATAATCGACGGAAAAGCCATAGCCCAGACCATCCGAAACGAAATTGCAGAGGAAGTCCGCCATCTCTCCCAGAAATATGGCAAGGTTCCAGGACTGGCAGTAGTGATTGTAGGGAACAGGAAGGACTCTCAGAGCTATGTGAGCATGAAGAGGAAGGCTTGTGCTGAGGTTGCCATTAAATCCTTGGACATAGACCTCCCTGAGTATGTGTCCCAAGACGACCTCATTGCCAAAGTTCATGAATTGAATGCCAATCCCGATGTTCATGGTATTCTAGTTCAGCTTCCATTGCCGAAGCATATTAATGAGGAGAAGGTGTTGAGTGAAATCAGCATCGAGAAGGATGTTGATGGCTTCCATCCTCTCAACATTGGCAAGCTCGCGATGAAAGGCAGAGAACCTCTGTTCCTTCCTTGCACTCCCAAGGGCTGCCTGGAACTTCTGTCACGGAGTGGCATAAGCATAAAGGGAAAGAAGGCAGTGGTGGTGGGCAGAAGTAACATAGTTGGATTGCCAGTTTCGTTGTTGCTTTTGAAAGCAGATGCTACGGTTACTGTAGTCCATTCTCATTCTCACGATCCAGAAAGTATCATTCGTGAAGCAGACATTATTATTGCTGCAGCAGGGCAGGCAATGATGATCAAGGGGAGTTGGATAAAACCAGGTGCTGCAGTCATTGATGTCGGAACAAATGCTATAGACGACTCAAGTAGAAAATCAGGCTATAGATTGGTTGGAGATGTCGATTTCCAGGAAGCATGTAAGGTTGCTGGATGGGTAACTCCTGTTCCTGGAGGCGTGGGCCCAATGACTGTTGCAATGTTACTCAAGAATACTTTGGATGGTGCTAAGCGTGTTATTGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

300

Amino Acids

31.96

Weight (kDa)

8.25

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 413
AciI	CCGC	2 cut(s)	27, 88
AclWI	GGATC	2 cut(s)	24, 602
AcoI	YGGCCR	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	2 cut(s)	277, 565
AjnI	CCWGG	5 cut(s)	118, 462, 691, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	165, 313, 409
AluI	AGCT	3 cut(s)	165, 313, 409
AlwI	GGATC	2 cut(s)	24, 602
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	2 cut(s)	24, 832
ApaI	GGGCCC	1 cut(s)	836
ApeKI	GCWGC	4 cut(s)	459, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	832, 833
BaeGI	GKGCMC	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	836
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	446, 634, 662, 685
BccI	CCATC	6 cut(s)	68, 99, 374, 396, 798, 866
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	5 cut(s)	120, 464, 693, 782, 822
BclI	TGATCA	1 cut(s)	669
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	5 cut(s)	585, 648, 699, 726, 754
BisI	GCNGC	5 cut(s)	27, 460, 648, 651, 699
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	5 cut(s)	28, 461, 649, 652, 700
Bme1390I	CCNGG	5 cut(s)	120, 464, 693, 782, 822
BmgT120I	GGNCC	2 cut(s)	832, 833
BmiI	GGNNCC	2 cut(s)	117, 834
BmrFI	CCNGG	5 cut(s)	120, 464, 693, 782, 822
BmsI	GCATC	2 cut(s)	372, 562
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	721, 842
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	213, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	129, 545
Bse3DI	GCAATG	4 cut(s)	255, 317, 669, 855
BseBI	CCWGG	5 cut(s)	120, 464, 693, 782, 822
BseDI	CCNNGG	2 cut(s)	213, 453
BseGI	GGATG	5 cut(s)	60, 379, 388, 809, 877
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	4 cut(s)	255, 317, 669, 855
BseMII	CTCAG	3 cut(s)	173, 186, 222
BseNI	ACTGG	2 cut(s)	129, 545
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	4 cut(s)	446, 634, 662, 685
Bsh1236I	CGCG	2 cut(s)	29, 413
BshFI	GGCC	2 cut(s)	26, 834
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	26, 834
Bsp120I	GGGCCC	1 cut(s)	832
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	3 cut(s)	16, 607, 669
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	2 cut(s)	27, 88
BspANI	GGCC	2 cut(s)	26, 834
BspCNI	CTCAG	3 cut(s)	172, 187, 223
BspFNI	CGCG	2 cut(s)	29, 413
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	117, 834
BspMAI	CTGCAG	2 cut(s)	652, 703
BspPI	GGATC	2 cut(s)	24, 602
BsrDI	GCAATG	4 cut(s)	255, 317, 669, 855
BsrI	ACTGG	2 cut(s)	129, 545
BssECI	CCNNGG	2 cut(s)	213, 453
BssMI	GATC	3 cut(s)	16, 607, 669
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	213, 453
Bst2UI	CCWGG	5 cut(s)	120, 464, 693, 782, 822
Bst4CI	ACNGT	3 cut(s)	580, 586, 844
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	407, 411, 660
BstDEI	CTNAG	4 cut(s)	159, 195, 231, 879
BstF5I	GGATG	5 cut(s)	60, 379, 388, 809, 877
BstFNI	CGCG	2 cut(s)	29, 413
BstKTI	GATC	3 cut(s)	19, 610, 672
BstMBI	GATC	3 cut(s)	16, 607, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 200, 319, 659
BstNI	CCWGG	5 cut(s)	120, 464, 693, 782, 822
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	5 cut(s)	118, 462, 691, 780, 820
BstSFI	CTRYAG	5 cut(s)	585, 648, 699, 726, 754
BstSLI	GKGCMC	1 cut(s)	836
BstUI	CGCG	2 cut(s)	29, 413
BstV1I	GCAGC	4 cut(s)	446, 634, 662, 685
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	26, 834
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	5 cut(s)	60, 379, 388, 809, 877
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	3 cut(s)	407, 411, 660
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	832, 833
CsiI	ACCWGGT	1 cut(s)	691
CviAII	CATG	5 cut(s)	22, 175, 269, 296, 789
DdeI	CTNAG	4 cut(s)	159, 195, 231, 879
DpnI	GATC	3 cut(s)	18, 609, 671
DpnII	GATC	3 cut(s)	16, 607, 669
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	213, 453
Eco24I	GRGCYC	1 cut(s)	836
EcoRII	CCWGG	5 cut(s)	118, 462, 691, 780, 820
EcoT14I	CCWWGG	2 cut(s)	213, 453
EcoT38I	GRGCYC	1 cut(s)	836
ErhI	CCWWGG	2 cut(s)	213, 453
FaeI	CATG	5 cut(s)	25, 178, 272, 299, 792
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	21, 174, 268, 295, 788
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	5 cut(s)	27, 460, 648, 651, 699
FokI	GGATG	5 cut(s)	47, 375, 386, 816, 884
FriOI	GRGCYC	1 cut(s)	836
Fsp4HI	GCNGC	5 cut(s)	27, 460, 648, 651, 699
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	5 cut(s)	27, 460, 648, 651, 699
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	26, 834
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	25, 178, 272, 299, 792
HinfI	GANTC	2 cut(s)	155, 734
Hpy188I	TCNGA	4 cut(s)	16, 65, 162, 716
Hpy188III	TCNNGA	8 cut(s)	269, 287, 367, 412, 605, 611, 626, 859
Hpy99I	CGWCG	2 cut(s)	10, 41
HpyAV	CCTTC	6 cut(s)	145, 178, 337, 364, 449, 499
HpyCH4III	ACNGT	3 cut(s)	580, 586, 844
HpyCH4V	TGCA	6 cut(s)	77, 447, 650, 701, 848, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 200, 319, 659
HpyF3I	CTNAG	4 cut(s)	159, 195, 231, 879
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	25, 178, 272, 299, 792
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	16, 607, 669
Lsp1109I	GCAGC	4 cut(s)	446, 634, 662, 685
LweI	GCATC	2 cut(s)	372, 562
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	5 cut(s)	474, 527, 580, 808, 852
MalI	GATC	3 cut(s)	18, 609, 671
MboI	GATC	3 cut(s)	16, 607, 669
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	2 cut(s)	72, 272
MlyI	GAGTC	2 cut(s)	149, 728
MmeI	TCCRAC	4 cut(s)	517, 662, 694, 745
MnlI	CCTC	9 cut(s)	73, 174, 190, 236, 263, 331, 402, 441, 818
MseI	TTAA	2 cut(s)	207, 333
MslI	CAYNNNNRTG	1 cut(s)	333
MspR9I	CCNGG	5 cut(s)	120, 464, 693, 782, 822
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	5 cut(s)	120, 464, 693, 782, 822
MvnI	CGCG	2 cut(s)	29, 413
MwoI	GCNNNNNNNGC	4 cut(s)	171, 200, 319, 659
NdeII	GATC	3 cut(s)	16, 607, 669
NlaIII	CATG	5 cut(s)	25, 178, 272, 299, 792
NlaIV	GGNNCC	2 cut(s)	117, 834
NmuCI	GTSAC	1 cut(s)	474
NruI	TCGCGA	1 cut(s)	413
NspI	RCATGY	1 cut(s)	792
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	283
PfoI	TCCNGGA	3 cut(s)	118, 780, 820
PkrI	GCNGC	5 cut(s)	28, 461, 649, 652, 700
PleI	GAGTC	2 cut(s)	149, 728
PpsI	GAGTC	2 cut(s)	149, 728
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	5 cut(s)	118, 462, 691, 780, 820
PspGI	CCWGG	5 cut(s)	118, 462, 691, 780, 820
PspN4I	GGNNCC	2 cut(s)	117, 834
PspOMI	GGGCCC	1 cut(s)	832
PspPI	GGNCC	2 cut(s)	832, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	801, 833
PstI	CTGCAG	2 cut(s)	652, 703
PstNI	CAGNNNCTG	1 cut(s)	698
RruI	TCGCGA	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	207, 333
SatI	GCNGC	5 cut(s)	27, 460, 648, 651, 699
Sau3AI	GATC	3 cut(s)	16, 607, 669
Sau96I	GGNCC	2 cut(s)	832, 833
SchI	GAGTC	2 cut(s)	149, 728
ScrFI	CCNGG	5 cut(s)	120, 464, 693, 782, 822
SduI	GDGCHC	1 cut(s)	836
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	2 cut(s)	372, 562
SfcI	CTRYAG	5 cut(s)	585, 648, 699, 726, 754
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	736, 857
SmoI	CTYRAG	2 cut(s)	736, 857
Sse9I	AATT	2 cut(s)	72, 272
SsiI	CCGC	2 cut(s)	27, 88
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	5 cut(s)	118, 462, 691, 780, 820
StyI	CCWWGG	2 cut(s)	213, 453
TaaI	ACNGT	3 cut(s)	580, 586, 844
TaqI	TCGA	3 cut(s)	36, 366, 774
TasI	AATT	2 cut(s)	72, 272
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	207, 333
Tru9I	TTAA	2 cut(s)	207, 333
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	4 cut(s)	459, 647, 650, 698
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	5 cut(s)	191, 257, 284, 285, 431
TspGWI	ACGGA	2 cut(s)	54, 493
TspRI	CASTG	1 cut(s)	516
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 460
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.