Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Reverse (-)

37783280 .. 37784664

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0235400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCTCTCGTCGCCTCCCAGCCTTTGTCTTCCCACTTTTGCTTTTCACTTTCTCGCTTATGTGCTCCAAAACACTGGTCCAAGGAGCTCGCTGTCTTCTCGAGACTCAAGTGCCTCAGGTGCCTGAGCTTCCAAAGCCTGAATTGCCCCATCTTTCTAGTCTTCCAACCTTGCCAAAGCCTGAACTGCCACAACTGCCGAAGGCCGAGCTGCCACCATTGCCAAAGCCGCAGCTTTCACAACTGCCAAAGCCAGAGTTGCCACATTTGCCTAAGCCAGAATTGCCATCATTGCCTAAGCCCGAGTTGCCACCATTGCCTCATGTACCAACTTTGCCAAAGCCTGAAGGCCTCAAGTTAGCTGAACAACCCCATCTCTCAACCATGCCTGAGCTTCCACCATTGCCAAAGCAGGAGGAGCTGCCATCATTGCCAAAGCCCGAACTCCCATCCCTTCCGAATTTCCCAAGTTTTCCAAAGCCTGAGTTACCAACACTACCTAATCCGGAAATGCCAACTTTACCTCCACTGCCTCATCTCCCCGAGCTCCCTAAGACTGGATTGCCCACCATTCCAACCCTCCCGAAAGACAAAACCATCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

202

Amino Acids

22.24

Weight (kDa)

7.8

Isoelectric Point (pI)

79.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	557
AluBI	AGCT	8 cut(s)	89, 130, 211, 235, 362, 394, 421, 547
AluI	AGCT	8 cut(s)	89, 130, 211, 235, 362, 394, 421, 547
Alw21I	GWGCWC	3 cut(s)	68, 91, 549
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	3 cut(s)	101, 302, 542
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	3 cut(s)	3, 204, 349
ApeKI	GCWGC	3 cut(s)	211, 232, 421
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	1 cut(s)	79
AvaI	CYCGRG	3 cut(s)	101, 302, 542
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	2 cut(s)	91, 549
BbsI	GAAGAC	3 cut(s)	22, 89, 155
Bbv12I	GWGCWC	3 cut(s)	68, 91, 549
BbvI	GCAGC	3 cut(s)	198, 244, 408
BccI	CCATC	6 cut(s)	159, 295, 381, 433, 457, 605
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	4 cut(s)	212, 230, 233, 422
BlsI	GCNGC	4 cut(s)	213, 231, 234, 423
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	3 cut(s)	101, 302, 542
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	123
BpiI	GAAGAC	3 cut(s)	22, 89, 155
Bpu10I	CCTNAGC	4 cut(s)	126, 273, 297, 390
BpuEI	CTTGAG	2 cut(s)	93, 338
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	81, 562
Bse21I	CCTNAGG	1 cut(s)	117
Bse3DI	GCAATG	5 cut(s)	218, 290, 314, 401, 428
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	449, 597
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	5 cut(s)	218, 290, 314, 401, 428
BseMII	CTCAG	4 cut(s)	117, 131, 381, 474
BseNI	ACTGG	2 cut(s)	81, 562
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	198, 244, 408
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	5, 206, 351
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	68, 91, 549
BsiHKCI	CYCGRG	3 cut(s)	101, 302, 542
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	5, 206, 351
BsoBI	CYCGRG	3 cut(s)	101, 302, 542
Bsp1286I	GDGCHC	3 cut(s)	68, 91, 549
Bsp13I	TCCGGA	1 cut(s)	505
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	5, 206, 351
BspCNI	CTCAG	4 cut(s)	118, 130, 382, 475
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	5 cut(s)	218, 290, 314, 401, 428
BsrI	ACTGG	2 cut(s)	81, 562
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	7 cut(s)	117, 126, 273, 297, 390, 483, 552
BstF5I	GGATG	2 cut(s)	449, 597
BstMAI	GTCTC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	198, 244, 408
BstV2I	GAAGAC	3 cut(s)	22, 89, 155
BstXI	CCANNNNNNTGG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	5, 206, 351
BtsCI	GGATG	2 cut(s)	449, 597
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	74, 527
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	323, 385
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	7 cut(s)	117, 126, 273, 297, 390, 483, 552
Ecl136II	GAGCTC	2 cut(s)	89, 547
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	91, 549
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	2 cut(s)	89, 547
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	117
Eco88I	CYCGRG	3 cut(s)	101, 302, 542
EcoICRI	GAGCTC	2 cut(s)	89, 547
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	91, 549
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	326, 388
FaiI	YATR	3 cut(s)	62, 324, 386
FatI	CATG	2 cut(s)	322, 384
Fnu4HI	GCNGC	4 cut(s)	212, 230, 233, 422
FokI	GGATG	2 cut(s)	436, 584
FriOI	GRGCYC	2 cut(s)	91, 549
Fsp4HI	GCNGC	4 cut(s)	212, 230, 233, 422
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	4 cut(s)	212, 230, 233, 422
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	5, 206, 351
HapII	CCGG	1 cut(s)	506
Hin1II	CATG	2 cut(s)	326, 388
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	4 cut(s)	101, 103, 506, 583
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	196, 341, 464
HpyF3I	CTNAG	7 cut(s)	117, 126, 273, 297, 390, 483, 552
Hsp92II	CATG	2 cut(s)	326, 388
Kpn2I	TCCGGA	1 cut(s)	505
LmnI	GCTCC	4 cut(s)	71, 86, 418, 552
Lsp1109I	GCAGC	3 cut(s)	198, 244, 408
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	486
MboII	GAAGA	3 cut(s)	22, 89, 155
MhlI	GDGCHC	3 cut(s)	68, 91, 549
MluCI	AATT	3 cut(s)	143, 281, 460
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	191, 599
MnlI	CCTC	9 cut(s)	16, 26, 126, 330, 362, 409, 534, 543, 590
MroI	TCCGGA	1 cut(s)	505
MspI	CCGG	1 cut(s)	506
NlaIII	CATG	2 cut(s)	326, 388
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	213, 231, 234, 423
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	2 cut(s)	91, 549
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacI	GAGCTC	2 cut(s)	91, 549
SatI	GCNGC	4 cut(s)	212, 230, 233, 422
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	68, 91, 549
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	3 cut(s)	101, 108, 353
SmoI	CTYRAG	3 cut(s)	101, 108, 353
Sse9I	AATT	3 cut(s)	143, 281, 460
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	2 cut(s)	91, 549
StuI	AGGCCT	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	143, 281, 460
TauI	GCSGC	1 cut(s)	232
TscAI	CASTG	2 cut(s)	81, 534
TseI	GCWGC	3 cut(s)	211, 232, 421
TspRI	CASTG	2 cut(s)	81, 534
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.