Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Forward (+)

54470610 .. 54472376

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGTCGCAATCAGATCACCAGGCTAAGATAATTGACGGCAAAGCCATTGCACAGACCATCCGATCTGAAATTGCTGAGGAAGTTCGCCATCTCTCTCAGAAATATGGCAAGGTCCCTGGACTGGCAGTAGTGATTGTGGGGAGCAGGAAGGACTCCCAAAGCTATGTCAGCATGAAGCGAAAGGCATGCACTGAAGTTGGCATTAAATCTGTCGACATAGATCTCCCTGAGAATGTGTCCCTAGATGATCTCATAGCCAAAGTTCACGAATTAAATGCGAATCCTGATGTACATGGCATACTTGTTCAGCTTCCATTGCCAAGGCATATTAATGAAGAAAAAGTGTTAAGTGAAATCAGCATCGAGAAGGATGTAGATGGGTTTCATCCTCTCAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTTTATTCCTCCCTTGCACTCCCAAGGGCTGTCTTGAACTTCTATCACGGAGTGGTATAAGCATAACGGGAAAGAAGGCAGTCGTGGTGGGAAGAAGTAACATAGATGGATTGCCAGTTTCATTGCTGCTTTTGAAAGCCAATGCTACTGTTACCGTGATTCATTCCAACACTCCTGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCAATTACAGATGTTGGCACAAATGCTGTAGATGACTCCAGTAAAAAGTCGGGTTATAGATTGGTTACCTCAGCTACCGTAGCTGGATGGATAACTCCGGTTCCTGGTGGAGTTGGCCCGATGACTGTTGCAATGCTTCTCAAGAACACATTGGATGGTGCTAAGCGAGTGATTGCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

293

Amino Acids

31.11

Weight (kDa)

8.65

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	12 - 127	2.5e-43	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	148 - 289	6.8e-51	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	876
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	124, 803
AgsI	TTSAA	2 cut(s)	467, 565
AjnI	CCWGG	4 cut(s)	21, 118, 691, 802
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	165, 313, 773, 782
AluI	AGCT	4 cut(s)	165, 313, 773, 782
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	4 cut(s)	556, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	115, 815
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	115
BbvCI	CCTCAGC	2 cut(s)	78, 769
BbvI	GCAGC	4 cut(s)	543, 634, 662, 685
BccI	CCATC	6 cut(s)	68, 99, 374, 530, 780, 848
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 260, 294
BciT130I	CCWGG	4 cut(s)	23, 120, 693, 804
BclI	TGATCA	1 cut(s)	669
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	648, 726
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	557, 648, 651, 699
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	4 cut(s)	558, 649, 652, 700
Bme1390I	CCNGG	4 cut(s)	23, 120, 693, 804
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 815
BmiI	GGNNCC	2 cut(s)	117, 801
BmrFI	CCNGG	4 cut(s)	23, 120, 693, 804
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	2 cut(s)	78, 769
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	118, 323, 453
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 803
Bse1I	ACTGG	3 cut(s)	129, 545, 738
Bse3DI	GCAATG	6 cut(s)	48, 317, 420, 551, 669, 837
BseBI	CCWGG	4 cut(s)	23, 120, 693, 804
BseDI	CCNNGG	3 cut(s)	118, 323, 453
BseGI	GGATG	5 cut(s)	60, 379, 388, 791, 859
BseLI	CCNNNNNNNGG	2 cut(s)	124, 803
BseMI	GCAATG	6 cut(s)	48, 317, 420, 551, 669, 837
BseMII	CTCAG	4 cut(s)	69, 113, 222, 783
BseNI	ACTGG	3 cut(s)	129, 545, 738
BseXI	GCAGC	4 cut(s)	543, 634, 662, 685
BshFI	GGCC	1 cut(s)	816
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	2 cut(s)	101, 226
BslI	CCNNNNNNNGG	2 cut(s)	124, 803
BsmFI	GGGAC	2 cut(s)	101, 226
BsnI	GGCC	1 cut(s)	816
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	4 cut(s)	70, 112, 223, 782
BspLI	GGNNCC	2 cut(s)	117, 801
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	602
BsrDI	GCAATG	6 cut(s)	48, 317, 420, 551, 669, 837
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	129, 545, 738
BssECI	CCNNGG	3 cut(s)	118, 323, 453
BssMI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	323, 453
Bst2UI	CCWGG	4 cut(s)	23, 120, 693, 804
Bst4CI	ACNGT	4 cut(s)	580, 586, 778, 826
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	6 cut(s)	27, 78, 99, 231, 769, 861
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	5 cut(s)	60, 379, 388, 791, 859
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	6 cut(s)	19, 68, 226, 253, 610, 672
BstMBI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 779
BstNI	CCWGG	4 cut(s)	23, 120, 693, 804
BstNSI	RCATGY	1 cut(s)	192
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	4 cut(s)	21, 118, 691, 802
BstSFI	CTRYAG	2 cut(s)	648, 726
BstV1I	GCAGC	4 cut(s)	543, 634, 662, 685
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	816
BtsCI	GGATG	5 cut(s)	60, 379, 388, 791, 859
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	2 cut(s)	115, 815
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	175, 189, 296
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	6 cut(s)	27, 78, 99, 231, 769, 861
DpnI	GATC	6 cut(s)	18, 67, 225, 252, 609, 671
DpnII	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
DraIII	CACNNNGTG	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	323, 453
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	763
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	763
EcoRII	CCWGG	4 cut(s)	21, 118, 691, 802
EcoT14I	CCWWGG	2 cut(s)	323, 453
ErhI	CCWWGG	2 cut(s)	323, 453
FaeI	CATG	3 cut(s)	178, 192, 299
FaqI	GGGAC	2 cut(s)	101, 226
FatI	CATG	3 cut(s)	174, 188, 295
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FokI	GGATG	5 cut(s)	47, 375, 386, 798, 866
Fsp4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FspBI	CTAG	1 cut(s)	245
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	4 cut(s)	557, 648, 651, 699
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	1 cut(s)	797
HhaI	GCGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	178, 192, 299
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	155, 283, 589, 734
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	217, 268
Hpy188I	TCNGA	4 cut(s)	16, 65, 70, 102
Hpy188III	TCNNGA	8 cut(s)	269, 287, 367, 464, 605, 611, 626, 841
Hpy8I	GTNNAC	2 cut(s)	217, 268
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	145, 364, 499
HpyCH4III	ACNGT	4 cut(s)	580, 586, 778, 826
HpyCH4V	TGCA	7 cut(s)	53, 192, 413, 447, 650, 701, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 779
HpyF3I	CTNAG	6 cut(s)	27, 78, 99, 231, 769, 861
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	178, 192, 299
HspAI	GCGC	1 cut(s)	875
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	543, 634, 662, 685
LweI	GCATC	1 cut(s)	372
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	3 cut(s)	527, 580, 763
MalI	GATC	6 cut(s)	18, 67, 225, 252, 609, 671
MboI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
MboII	GAAGA	2 cut(s)	350, 534
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	33, 72, 272, 702
MlyI	GAGTC	2 cut(s)	149, 728
MmeI	TCCRAC	2 cut(s)	621, 662
MnlI	CCTC	4 cut(s)	73, 402, 449, 778
MseI	TTAA	4 cut(s)	207, 275, 333, 350
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	4 cut(s)	23, 120, 693, 804
MvaI	CCWGG	4 cut(s)	23, 120, 693, 804
MwoI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 779
NdeII	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
NlaIII	CATG	3 cut(s)	178, 192, 299
NlaIV	GGNNCC	2 cut(s)	117, 801
NsbI	TGCGCA	1 cut(s)	876
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	283, 589
PkrI	GCNGC	4 cut(s)	558, 649, 652, 700
PleI	GAGTC	2 cut(s)	149, 728
PpsI	GAGTC	2 cut(s)	149, 728
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	4 cut(s)	21, 118, 691, 802
PspEI	GGTNACC	1 cut(s)	763
PspGI	CCWGG	4 cut(s)	21, 118, 691, 802
PspN4I	GGNNCC	2 cut(s)	117, 801
PspPI	GGNCC	2 cut(s)	115, 815
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	207, 275, 333, 350
SatI	GCNGC	4 cut(s)	557, 648, 651, 699
Sau3AI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
Sau96I	GGNCC	2 cut(s)	115, 815
SchI	GAGTC	2 cut(s)	149, 728
ScrFI	CCNGG	4 cut(s)	23, 120, 693, 804
SetI	ASST	8 cut(s)	117, 167, 315, 433, 697, 770, 775, 784
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	648, 726
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	4 cut(s)	33, 72, 272, 702
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	4 cut(s)	21, 118, 691, 802
StyI	CCWWGG	2 cut(s)	323, 453
TaaI	ACNGT	4 cut(s)	580, 586, 778, 826
TaqI	TCGA	2 cut(s)	216, 366
TasI	AATT	4 cut(s)	33, 72, 272, 702
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	283, 589
Tru1I	TTAA	4 cut(s)	207, 275, 333, 350
Tru9I	TTAA	4 cut(s)	207, 275, 333, 350
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	4 cut(s)	556, 647, 650, 698
TspDTI	ATGAA	6 cut(s)	191, 351, 377, 431, 540, 581
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.