Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Reverse (-)

13928777 .. 13932109

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGTCGCAATCAGATCACCAGGCTAAGATAATTGACGGCAAAGCCATAGCACAGACCATCCGATCTGAAATTGCTGAGGAAGTTCACCATCTCTCTCAGAAATATGGCAAGGTCCCTGGACTGGCAGTAGTGATTGTGGGGAGCAGGAAGGACTCCCAAAGCTATGTCGGCATGAAGCGAAAGGCATGCGCTGAAGTTGGCATTAAATCTGTCGACATAGATCTCCCTGAGAATGTGTCCCTAGATGATCTCGTAGCCAAAGTTCACGAATTAAATGCGAATCCTGATGTACACGGCATACTTGTTCAGCTTCCATTGCCAAGGCATATTAATGAAGAGAAAGTGTTGAGTGAAATCAGCATCGAGAAGGATGTAGATGGGTTTCATCCTCTCAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTTTATTCCTCCCTTGCACTCCCAAGGCAAGACACTCAAGTAATGGCTGTCTTGAACTTCTGTCACGGAGTGGTATAAGCATAACGGGAAAGAAGGCAGTCGTGGTGGGAAGAAGTAACATAGTTGGATTACCAGTTTCATTGCTGCTTTTGAAAGCCAATGCTACTGTTACTGTGGTTCATTCCAACACTCCTGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCAATTATAGATGTTGGCACAAATGCTGTAGATGACTCCAGCAAAAAGTCGGGTTATAGATTGGTCGGGGATGTAGATTTCCAGGAAGCATGTAAGGTAGCTGGATGGATAACTCCGGTTCCTGGTGGAGTTGGCCCGATGACTGTTGCAATGCTTCTCAAGAACACATTGGATGGTGCTAAGCGAGTGATTGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

305

Amino Acids

32.41

Weight (kDa)

8.26

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	12 - 127	5.4e-43	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	157 - 301	3.6e-57	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	124, 839
AgsI	TTSAA	2 cut(s)	485, 583
AjnI	CCWGG	5 cut(s)	21, 118, 709, 798, 838
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	165, 313, 818
AluI	AGCT	3 cut(s)	165, 313, 818
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	850
ApeKI	GCWGC	4 cut(s)	574, 665, 668, 716
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	115, 851
AsuHPI	GGTGA	2 cut(s)	11, 80
AvaII	GGWCC	1 cut(s)	115
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	561, 652, 680, 703
BccI	CCATC	5 cut(s)	68, 99, 374, 816, 884
BceAI	ACGGC	2 cut(s)	55, 313
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 260, 294
BciT130I	CCWGG	5 cut(s)	23, 120, 711, 800, 840
BclI	TGATCA	1 cut(s)	687
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	666, 744
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	575, 666, 669, 717
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	4 cut(s)	576, 667, 670, 718
Bme1390I	CCNGG	5 cut(s)	23, 120, 711, 800, 840
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 851
BmiI	GGNNCC	2 cut(s)	117, 837
BmrFI	CCNGG	5 cut(s)	23, 120, 711, 800, 840
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	739
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	2 cut(s)	451, 860
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	118, 323, 453
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 839
Bse1I	ACTGG	2 cut(s)	129, 563
Bse3DI	GCAATG	5 cut(s)	317, 420, 569, 687, 873
BseBI	CCWGG	5 cut(s)	23, 120, 711, 800, 840
BseDI	CCNNGG	3 cut(s)	118, 323, 453
BseGI	GGATG	6 cut(s)	60, 379, 388, 793, 827, 895
BseLI	CCNNNNNNNGG	2 cut(s)	124, 839
BseMI	GCAATG	5 cut(s)	317, 420, 569, 687, 873
BseMII	CTCAG	3 cut(s)	69, 113, 222
BseNI	ACTGG	2 cut(s)	129, 563
BseXI	GCAGC	4 cut(s)	561, 652, 680, 703
BshFI	GGCC	1 cut(s)	852
BsiSI	CCGG	1 cut(s)	833
BslFI	GGGAC	2 cut(s)	101, 226
BslI	CCNNNNNNNGG	2 cut(s)	124, 839
BsmFI	GGGAC	2 cut(s)	101, 226
BsnI	GGCC	1 cut(s)	852
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
Bsp1720I	GCTNAGC	1 cut(s)	897
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	1 cut(s)	852
BspCNI	CTCAG	3 cut(s)	70, 112, 223
BspLI	GGNNCC	2 cut(s)	117, 837
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	1 cut(s)	620
BsrDI	GCAATG	5 cut(s)	317, 420, 569, 687, 873
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	129, 563
BssECI	CCNNGG	3 cut(s)	118, 323, 453
BssMI	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	323, 453
Bst2UI	CCWGG	5 cut(s)	23, 120, 711, 800, 840
Bst4CI	ACNGT	3 cut(s)	598, 604, 862
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	27, 78, 99, 231, 897
BstF5I	GGATG	6 cut(s)	60, 379, 388, 793, 827, 895
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	19, 68, 226, 253, 628, 690
BstMBI	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 319, 677
BstNI	CCWGG	5 cut(s)	23, 120, 711, 800, 840
BstNSI	RCATGY	2 cut(s)	192, 810
BstSCI	CCNGG	5 cut(s)	21, 118, 709, 798, 838
BstSFI	CTRYAG	2 cut(s)	666, 744
BstV1I	GCAGC	4 cut(s)	561, 652, 680, 703
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	852
BtsCI	GGATG	6 cut(s)	60, 379, 388, 793, 827, 895
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	115, 851
CsiI	ACCWGGT	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	175, 189, 807
CviJI	RGCY	9 cut(s)	26, 47, 165, 260, 313, 477, 587, 818, 852
CviKI_1	RGCY	9 cut(s)	26, 47, 165, 260, 313, 477, 587, 818, 852
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	5 cut(s)	27, 78, 99, 231, 897
DpnI	GATC	6 cut(s)	18, 67, 225, 252, 627, 689
DpnII	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
DraIII	CACNNNGTG	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	323, 453
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	5 cut(s)	21, 118, 709, 798, 838
EcoT14I	CCWWGG	2 cut(s)	323, 453
ErhI	CCWWGG	2 cut(s)	323, 453
FaeI	CATG	3 cut(s)	178, 192, 810
FaqI	GGGAC	2 cut(s)	101, 226
FatI	CATG	3 cut(s)	174, 188, 806
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	575, 666, 669, 717
FokI	GGATG	6 cut(s)	47, 375, 386, 800, 834, 902
Fsp4HI	GCNGC	4 cut(s)	575, 666, 669, 717
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	4 cut(s)	575, 666, 669, 717
GsuI	CTGGAG	1 cut(s)	739
HaeIII	GGCC	1 cut(s)	852
HapII	CCGG	1 cut(s)	833
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	178, 192, 810
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	155, 283, 752
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	2 cut(s)	11, 80
Hpy166II	GTNNAC	4 cut(s)	88, 217, 268, 295
Hpy188I	TCNGA	4 cut(s)	16, 65, 70, 102
Hpy188III	TCNNGA	8 cut(s)	269, 287, 367, 482, 623, 629, 644, 877
Hpy8I	GTNNAC	4 cut(s)	88, 217, 268, 295
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	145, 364, 517
HpyCH4III	ACNGT	3 cut(s)	598, 604, 862
HpyCH4V	TGCA	6 cut(s)	413, 447, 668, 719, 866, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 319, 677
HpyF3I	CTNAG	5 cut(s)	27, 78, 99, 231, 897
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	178, 192, 810
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	561, 652, 680, 703
LweI	GCATC	1 cut(s)	372
MabI	ACCWGGT	1 cut(s)	709
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	3 cut(s)	492, 545, 598
MalI	GATC	6 cut(s)	18, 67, 225, 252, 627, 689
MboI	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
MboII	GAAGA	2 cut(s)	350, 552
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	33, 72, 272, 720
MlyI	GAGTC	2 cut(s)	149, 746
MmeI	TCCRAC	3 cut(s)	535, 639, 680
MnlI	CCTC	3 cut(s)	73, 402, 449
MseI	TTAA	3 cut(s)	207, 275, 333
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	5 cut(s)	23, 120, 711, 800, 840
MvaI	CCWGG	5 cut(s)	23, 120, 711, 800, 840
MwoI	GCNNNNNNNGC	3 cut(s)	171, 319, 677
NdeII	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
NlaIII	CATG	3 cut(s)	178, 192, 810
NlaIV	GGNNCC	2 cut(s)	117, 837
NmuCI	GTSAC	1 cut(s)	492
NspI	RCATGY	2 cut(s)	192, 810
PaeI	GCATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	576, 667, 670, 718
PleI	GAGTC	2 cut(s)	149, 746
PpsI	GAGTC	2 cut(s)	149, 746
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	5 cut(s)	21, 118, 709, 798, 838
PspGI	CCWGG	5 cut(s)	21, 118, 709, 798, 838
PspN4I	GGNNCC	2 cut(s)	117, 837
PspPI	GGNCC	2 cut(s)	115, 851
PspPPI	RGGWCCY	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	249, 281
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	207, 275, 333
SatI	GCNGC	4 cut(s)	575, 666, 669, 717
Sau3AI	GATC	6 cut(s)	16, 65, 223, 250, 625, 687
Sau96I	GGNCC	2 cut(s)	115, 851
SchI	GAGTC	2 cut(s)	149, 746
ScrFI	CCNGG	5 cut(s)	23, 120, 711, 800, 840
SetI	ASST	7 cut(s)	117, 167, 315, 433, 715, 816, 820
SexAI	ACCWGGT	1 cut(s)	709
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	666, 744
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	466, 875
SmoI	CTYRAG	2 cut(s)	466, 875
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	4 cut(s)	33, 72, 272, 720
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	5 cut(s)	21, 118, 709, 798, 838
StyI	CCWWGG	2 cut(s)	323, 453
TaaI	ACNGT	3 cut(s)	598, 604, 862
TaqI	TCGA	2 cut(s)	216, 366
TasI	AATT	4 cut(s)	33, 72, 272, 720
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	207, 275, 333
Tru9I	TTAA	3 cut(s)	207, 275, 333
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	4 cut(s)	574, 665, 668, 716
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	6 cut(s)	191, 351, 377, 431, 558, 599
TspGWI	ACGGA	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	2 cut(s)	192, 810
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.