Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Forward (+)

22628105 .. 22629909

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCATCACAATCTGATCACAAGGCTGCGATAATTGATGGGAAAGCTATAGCTCAGACCATCCGAAATGAGATTGCGGAGGAAGTTCGTCATCTGTCCCAGAAATACGGCAAGGTTCCGGGACTGGCAGTGGTGATAGTTGGGACCCGGAAGGACTCCCAAAGCTATGTGAGCATGAAGCGAAAGGCGTGCGCTGAAGTTGGGATCAAATCTGTGGACATTGACCTCCCGGAGAATGTGTCCCAAGACGACCTCATTGCCAAAGTTCACGAATTGAATGCTACTGCTGATGTACATGGTATACTAGTTCAGCTCCCATTGCCAAACCATATTAATGAGGAGAAAGTGTTGAGTGAAATCAGCATCGAGAAGGATGTTGATGGCTTTCATCCTCTCAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTCTGTTCCTTCCTTGCACTCCCAAGGGATGTCTTGAACTTCTGTCGCGAAGTGGGATAAGCATAAAGGGGAAGAAAGCAGTGGTTGTTGGCAGAAGTAACATTGTTGGATTACCAGTTTCATTGCTTCTTTTGAAAGCAGATGCTACTGTTACTGTAGTCCATTCCCGCACACCTGATCCAGAGAGTTTCATTCGTGAAGCGGACATTATTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCTGTCATTGATGTCGGCACAAATGCTATAGACGATCCGAGTAGAAAGTCAGGCTATAGATTGGTTGGAGATGTAGATTTCCAGGAAGCATGTAAGGTGGCCGGATGGGTAACTCCTGTTCCTGGCGGCGTCGGACCAATGACGGTGGCAATGTTGCTCAAGAACACTTTGGATGGTGCTAAGCATGCTATTGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

300

Amino Acids

31.8

Weight (kDa)

7.7

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	478
AciI	CCGC	4 cut(s)	77, 598, 632, 825
AclWI	GGATC	3 cut(s)	212, 602, 728
AcoI	YGGCCR	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	3 cut(s)	277, 467, 565
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	691, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	47, 53, 165, 313
AluI	AGCT	4 cut(s)	47, 53, 165, 313
AlwI	GGATC	3 cut(s)	212, 602, 728
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	26, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	144, 833
AsuC2I	CCSGG	3 cut(s)	120, 148, 230
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	144, 833
BbvI	GCAGC	4 cut(s)	13, 634, 662, 685
BccI	CCATC	5 cut(s)	32, 68, 374, 798, 866
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	6 cut(s)	171, 205, 239, 260, 273, 294
BciT130I	CCWGG	3 cut(s)	693, 782, 822
BclI	TGATCA	2 cut(s)	16, 669
BcnI	CCSGG	3 cut(s)	120, 148, 230
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	5 cut(s)	48, 585, 648, 726, 754
BisI	GCNGC	5 cut(s)	27, 648, 651, 699, 826
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	5 cut(s)	28, 649, 652, 700, 827
Bme1390I	CCNGG	6 cut(s)	120, 148, 230, 693, 782, 822
Bme18I	GGWCC	2 cut(s)	144, 833
BmgT120I	GGNCC	2 cut(s)	144, 833
BmiI	GGNNCC	3 cut(s)	117, 145, 146
BmrFI	CCNGG	6 cut(s)	120, 148, 230, 693, 782, 822
BmsI	GCATC	3 cut(s)	14, 372, 562
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	3 cut(s)	120, 148, 230
BsaHI	GRCGYC	1 cut(s)	828
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	129, 545
Bse3DI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseBI	CCWGG	3 cut(s)	693, 782, 822
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	6 cut(s)	60, 379, 388, 464, 809, 877
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	129, 545
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	13, 634, 662, 685
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	800
BsiSI	CCGG	4 cut(s)	119, 148, 230, 801
BslFI	GGGAC	4 cut(s)	82, 135, 157, 226
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmFI	GGGAC	4 cut(s)	82, 135, 157, 226
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	800
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	16, 204, 607, 669, 733
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp68I	TCGCGA	1 cut(s)	478
BspACI	CCGC	4 cut(s)	77, 598, 632, 825
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	117, 145, 146
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	3 cut(s)	212, 602, 728
BsrDI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	129, 545
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	5 cut(s)	16, 204, 607, 669, 733
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	453
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	693, 782, 822
Bst4CI	ACNGT	3 cut(s)	580, 586, 844
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	190, 885
BstDEI	CTNAG	2 cut(s)	54, 879
BstF5I	GGATG	6 cut(s)	60, 379, 388, 464, 809, 877
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	19, 207, 610, 672, 736
BstMBI	GATC	5 cut(s)	16, 204, 607, 669, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
BstNI	CCWGG	3 cut(s)	693, 782, 822
BstNSI	RCATGY	2 cut(s)	792, 887
BstSCI	CCNGG	6 cut(s)	118, 146, 228, 691, 780, 820
BstSFI	CTRYAG	5 cut(s)	48, 585, 648, 726, 754
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	13, 634, 662, 685
BstZ17I	GTATAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	6 cut(s)	60, 379, 388, 464, 809, 877
BtsI	GCAGTG	2 cut(s)	135, 516
BtsIMutI	CAGTG	2 cut(s)	135, 516
BtuMI	TCGCGA	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	190, 885
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	144, 833
CseI	GACGC	1 cut(s)	817
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	4 cut(s)	175, 296, 789, 884
CviJI	RGCY	8 cut(s)	26, 47, 53, 165, 313, 384, 753, 800
CviKI_1	RGCY	8 cut(s)	26, 47, 53, 165, 313, 384, 753, 800
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	54, 879
DpnI	GATC	5 cut(s)	18, 206, 609, 671, 735
DpnII	GATC	5 cut(s)	16, 204, 607, 669, 733
EaeI	YGGCCR	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	144, 833
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	691, 780, 820
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	178, 299, 792, 887
FaqI	GGGAC	4 cut(s)	82, 135, 157, 226
FatI	CATG	4 cut(s)	174, 295, 788, 883
FauI	CCCGC	1 cut(s)	605
FbaI	TGATCA	2 cut(s)	16, 669
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	27, 648, 651, 699, 826
FokI	GGATG	6 cut(s)	47, 375, 386, 471, 816, 884
Fsp4HI	GCNGC	5 cut(s)	27, 648, 651, 699, 826
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	5 cut(s)	27, 648, 651, 699, 826
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	4 cut(s)	119, 148, 230, 801
HgaI	GACGC	1 cut(s)	817
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	178, 299, 792, 887
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	4 cut(s)	119, 148, 230, 801
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	217, 268, 302
Hpy188I	TCNGA	5 cut(s)	16, 57, 65, 738, 833
Hpy188III	TCNNGA	7 cut(s)	269, 367, 464, 477, 611, 626, 859
Hpy8I	GTNNAC	3 cut(s)	217, 268, 302
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	3 cut(s)	145, 364, 449
HpyCH4III	ACNGT	3 cut(s)	580, 586, 844
HpyCH4V	TGCA	3 cut(s)	413, 447, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
HpyF3I	CTNAG	2 cut(s)	54, 879
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	178, 299, 792, 887
HspAI	GCGC	1 cut(s)	192
KflI	GGGWCCC	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	16, 669
Kzo9I	GATC	5 cut(s)	16, 204, 607, 669, 733
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	4 cut(s)	13, 634, 662, 685
LweI	GCATC	3 cut(s)	14, 372, 562
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	3 cut(s)	527, 580, 808
MalI	GATC	5 cut(s)	18, 206, 609, 671, 735
MboI	GATC	5 cut(s)	16, 204, 607, 669, 733
MboII	GAAGA	1 cut(s)	514
MluCI	AATT	2 cut(s)	33, 272
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	4 cut(s)	517, 662, 745, 811
MnlI	CCTC	6 cut(s)	73, 236, 263, 331, 402, 441
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	4 cut(s)	119, 148, 230, 801
MspR9I	CCNGG	6 cut(s)	120, 148, 230, 693, 782, 822
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	3 cut(s)	693, 782, 822
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
NciI	CCSGG	3 cut(s)	120, 148, 230
NdeII	GATC	5 cut(s)	16, 204, 607, 669, 733
NlaIII	CATG	4 cut(s)	178, 299, 792, 887
NlaIV	GGNNCC	3 cut(s)	117, 145, 146
NruI	TCGCGA	1 cut(s)	478
NspI	RCATGY	2 cut(s)	792, 887
PaeI	GCATGC	1 cut(s)	887
PctI	GAATGC	1 cut(s)	283
PfoI	TCCNGGA	3 cut(s)	118, 228, 780
PkrI	GCNGC	5 cut(s)	28, 649, 652, 700, 827
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	3 cut(s)	691, 780, 820
PspGI	CCWGG	3 cut(s)	691, 780, 820
PspN4I	GGNNCC	3 cut(s)	117, 145, 146
PspPI	GGNCC	2 cut(s)	144, 833
PspPPI	RGGWCCY	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	801, 833
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	698
RruI	TCGCGA	1 cut(s)	478
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	27, 648, 651, 699, 826
Sau3AI	GATC	5 cut(s)	16, 204, 607, 669, 733
Sau96I	GGNCC	2 cut(s)	144, 833
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	6 cut(s)	120, 148, 230, 693, 782, 822
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	3 cut(s)	14, 372, 562
SfcI	CTRYAG	5 cut(s)	48, 585, 648, 726, 754
SinI	GGWCC	2 cut(s)	144, 833
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	304
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	2 cut(s)	33, 272
SsiI	CCGC	4 cut(s)	77, 598, 632, 825
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	6 cut(s)	118, 146, 228, 691, 780, 820
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	580, 586, 844
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	33, 272
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	828
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	135, 516
TseI	GCWGC	4 cut(s)	26, 647, 650, 698
TspDTI	ATGAA	5 cut(s)	191, 377, 431, 540, 610
TspRI	CASTG	2 cut(s)	135, 516
VpaK11BI	GGWCC	2 cut(s)	144, 833
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	2 cut(s)	792, 887
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.