Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Reverse (-)

13996832 .. 13998573

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGTTGCAGTCAAATCACCAGGCTCAGATAATTGACGGCAAAGCCATGGCACAGACCATCCGATCTGAAATTGCTGAGGAAGTTCGCCATCTCTCTCAGAAATATGGCAAGGTCCCTGGACTGGCAGTAGTGATTGTGGGGAGCAGGAAGGACTCCCAAAGCTATGTCAGCATGAAGCGAAAGGCATGCGCTGAAGTTGGCATTAAATCTGTCGACATAGATCTACCTGAGAACGTGTCCCTAGATGATCTCATAGCCAAAGTTCACGAATTAAATGCGAATCCTGATGTACATGGCATACTTGTTCAGCTTCCATTGCCAAGGCATATTAATGAAGAGAAAGTATTAAGTGAAATCAGCATCGAGAAGGATGTAGATGGGTTTCATCCTCTCAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTTTATTCCTCCCGTGCACTCCCAAGGGCTGTCTTGAACTTCTGTCACGGAGTGGTATAAGCATAACGGGAAAGAAGGCAGTCGTGGTGGGAAGAAGTAACATAGTTGGATTGCCGGTTTCATTGCTGCTTTTGAAAGCCAATGCTACTGTTACCGTGGTTCATTCCAACACTCCTGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCAATTATAGATGTTGGCACAAATGCTGTAGATGACTCCAGTAAAAAGTCGGGTTATAGATTGGTCGGGGATGTAGATTTCCAGGAAGCATGTAAGGTAGCTGGATGGATAACTCCGGTTCCTGGTGGAGTTGGCCCGATGACTGTTGCAATGCTTCTCAAGAACACATTGGACGGTGCCAAGCGAGTGATTGCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

300

Amino Acids

31.83

Weight (kDa)

8.26

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	12 - 127	3.9e-43	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	148 - 295	3.1e-60	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	124, 821
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	467, 565
AjnI	CCWGG	5 cut(s)	21, 118, 691, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	165, 313, 800
AluI	AGCT	3 cut(s)	165, 313, 800
Alw21I	GWGCWC	1 cut(s)	449
Alw44I	GTGCAC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	832
ApaLI	GTGCAC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	556, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	194, 895
AspS9I	GGNCC	2 cut(s)	115, 833
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	449
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	543, 634, 662, 685
BccI	CCATC	4 cut(s)	68, 99, 374, 798
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 260, 294
BciT130I	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BclI	TGATCA	1 cut(s)	669
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	648, 726
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	557, 648, 651, 699
BlsI	GCNGC	4 cut(s)	558, 649, 652, 700
Bme1390I	CCNGG	5 cut(s)	23, 120, 693, 782, 822
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 833
BmiI	GGNNCC	3 cut(s)	117, 819, 877
BmrFI	CCNGG	5 cut(s)	23, 120, 693, 782, 822
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	842
BsaJI	CCNNGG	5 cut(s)	48, 118, 323, 453, 585
BsaWI	WCCGGW	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 821
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	2 cut(s)	129, 738
Bse3DI	GCAATG	5 cut(s)	317, 420, 551, 669, 855
BseBI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BseDI	CCNNGG	5 cut(s)	48, 118, 323, 453, 585
BseGI	GGATG	5 cut(s)	60, 379, 388, 775, 809
BseLI	CCNNNNNNNGG	2 cut(s)	124, 821
BseMI	GCAATG	5 cut(s)	317, 420, 551, 669, 855
BseMII	CTCAG	4 cut(s)	41, 69, 113, 222
BseNI	ACTGG	2 cut(s)	129, 738
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	4 cut(s)	543, 634, 662, 685
BshFI	GGCC	1 cut(s)	834
BshNI	GGYRCC	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	545, 815
BslFI	GGGAC	2 cut(s)	101, 226
BslI	CCNNNNNNNGG	2 cut(s)	124, 821
BsmFI	GGGAC	2 cut(s)	101, 226
BsnI	GGCC	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	65, 223, 250, 607, 669
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	4 cut(s)	40, 70, 112, 223
BspLI	GGNNCC	3 cut(s)	117, 819, 877
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	875
BsrDI	GCAATG	5 cut(s)	317, 420, 551, 669, 855
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	129, 738
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	5 cut(s)	48, 118, 323, 453, 585
BssMI	GATC	5 cut(s)	65, 223, 250, 607, 669
BssT1I	CCWWGG	3 cut(s)	48, 323, 453
Bst2UI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
Bst4CI	ACNGT	4 cut(s)	580, 586, 844, 875
Bst6I	CTCTTC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	4 cut(s)	27, 78, 99, 231
BstDSI	CCRYGG	2 cut(s)	48, 585
BstF5I	GGATG	5 cut(s)	60, 379, 388, 775, 809
BstHHI	GCGC	2 cut(s)	194, 895
BstKTI	GATC	5 cut(s)	68, 226, 253, 610, 672
BstMBI	GATC	5 cut(s)	65, 223, 250, 607, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
BstNI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BstNSI	RCATGY	2 cut(s)	192, 792
BstSCI	CCNGG	5 cut(s)	21, 118, 691, 780, 820
BstSFI	CTRYAG	2 cut(s)	648, 726
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	4 cut(s)	543, 634, 662, 685
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	834
BtgI	CCRYGG	2 cut(s)	48, 585
BtsCI	GGATG	5 cut(s)	60, 379, 388, 775, 809
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	2 cut(s)	194, 895
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	115, 833
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	5 cut(s)	49, 175, 189, 296, 789
CviJI	RGCY	9 cut(s)	26, 47, 165, 260, 313, 459, 569, 800, 834
CviKI_1	RGCY	9 cut(s)	26, 47, 165, 260, 313, 459, 569, 800, 834
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	4 cut(s)	27, 78, 99, 231
DpnI	GATC	5 cut(s)	67, 225, 252, 609, 671
DpnII	GATC	5 cut(s)	65, 223, 250, 607, 669
DraIII	CACNNNGTG	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	3 cut(s)	48, 323, 453
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	5 cut(s)	21, 118, 691, 780, 820
EcoT14I	CCWWGG	3 cut(s)	48, 323, 453
ErhI	CCWWGG	3 cut(s)	48, 323, 453
FaeI	CATG	5 cut(s)	52, 178, 192, 299, 792
FaqI	GGGAC	2 cut(s)	101, 226
FatI	CATG	5 cut(s)	48, 174, 188, 295, 788
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FokI	GGATG	5 cut(s)	47, 375, 386, 782, 816
Fsp4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FspBI	CTAG	1 cut(s)	245
FspI	TGCGCA	1 cut(s)	894
GlaI	GCGC	2 cut(s)	193, 894
GluI	GCNGC	4 cut(s)	557, 648, 651, 699
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	1 cut(s)	834
HapII	CCGG	2 cut(s)	545, 815
HhaI	GCGC	2 cut(s)	194, 895
Hin1II	CATG	5 cut(s)	52, 178, 192, 299, 792
Hin6I	GCGC	2 cut(s)	192, 893
HinP1I	GCGC	2 cut(s)	192, 893
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	155, 283, 734
HpaII	CCGG	2 cut(s)	545, 815
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	3 cut(s)	217, 268, 447
Hpy188I	TCNGA	4 cut(s)	30, 65, 70, 102
Hpy188III	TCNNGA	8 cut(s)	269, 287, 367, 464, 605, 611, 626, 859
Hpy8I	GTNNAC	3 cut(s)	217, 268, 447
HpyAV	CCTTC	3 cut(s)	145, 364, 499
HpyCH4III	ACNGT	4 cut(s)	580, 586, 844, 875
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	10, 413, 447, 650, 701, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
HpyF3I	CTNAG	4 cut(s)	27, 78, 99, 231
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	52, 178, 192, 299, 792
HspAI	GCGC	2 cut(s)	192, 893
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	65, 223, 250, 607, 669
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	543, 634, 662, 685
LweI	GCATC	1 cut(s)	372
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	474, 527, 580
MalI	GATC	5 cut(s)	67, 225, 252, 609, 671
MboI	GATC	5 cut(s)	65, 223, 250, 607, 669
MboII	GAAGA	2 cut(s)	350, 534
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	4 cut(s)	33, 72, 272, 702
MlyI	GAGTC	2 cut(s)	149, 728
MmeI	TCCRAC	3 cut(s)	517, 621, 662
MnlI	CCTC	3 cut(s)	73, 402, 449
MseI	TTAA	4 cut(s)	207, 275, 333, 350
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	2 cut(s)	545, 815
MspR9I	CCNGG	5 cut(s)	23, 120, 693, 782, 822
MvaI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
MwoI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	65, 223, 250, 607, 669
NlaIII	CATG	5 cut(s)	52, 178, 192, 299, 792
NlaIV	GGNNCC	3 cut(s)	117, 819, 877
NmuCI	GTSAC	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	894
NspI	RCATGY	2 cut(s)	192, 792
PaeI	GCATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	4 cut(s)	558, 649, 652, 700
PleI	GAGTC	2 cut(s)	149, 728
PpsI	GAGTC	2 cut(s)	149, 728
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	5 cut(s)	21, 118, 691, 780, 820
PspGI	CCWGG	5 cut(s)	21, 118, 691, 780, 820
PspN4I	GGNNCC	3 cut(s)	117, 819, 877
PspPI	GGNCC	2 cut(s)	115, 833
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	207, 275, 333, 350
SatI	GCNGC	4 cut(s)	557, 648, 651, 699
Sau3AI	GATC	5 cut(s)	65, 223, 250, 607, 669
Sau96I	GGNCC	2 cut(s)	115, 833
SchI	GAGTC	2 cut(s)	149, 728
ScrFI	CCNGG	5 cut(s)	23, 120, 693, 782, 822
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	9 cut(s)	117, 167, 232, 240, 315, 433, 697, 798, 802
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	648, 726
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	4 cut(s)	33, 72, 272, 702
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	5 cut(s)	21, 118, 691, 780, 820
StyI	CCWWGG	3 cut(s)	48, 323, 453
TaaI	ACNGT	4 cut(s)	580, 586, 844, 875
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	216, 366
TasI	AATT	4 cut(s)	33, 72, 272, 702
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	4 cut(s)	207, 275, 333, 350
Tru9I	TTAA	4 cut(s)	207, 275, 333, 350
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	4 cut(s)	556, 647, 650, 698
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	6 cut(s)	191, 351, 377, 431, 540, 581
TspGWI	ACGGA	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	2 cut(s)	192, 792
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.