Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Forward (+)

29098139 .. 29099804

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCATCGCAATCTGATCACAAGGCTGCGATAATCGATGGGAAAGCCATAGCTCAGACCATCCGAAATGAGATTGCTGAGGAAGTTCGCCATCTGTCGCAGAAATACTGCAAGGTCCCGGGACTGGCGGTAGTGATAGTAGGGACCAGGAAGGACTCCCAAAGCTATGTGAGCATGAAGCGAAAGGCGTGCGCTGAAGTTGGGATTAAATCGGTGGATATAGACCTCCCCGAGAATGTGTCCCAGGATGACCTCATTGCCAAAGTTCACGAATTGAATGCTACTTCCGATGTACATGGTATACTAGTTCAGCTCCCATTGCCAAACCATATTAATGAGGAGAAAGTGTTGAGTGAAATCAGCATCGAGAAGGATGTCGATGGCTTTCATCCTCTCAACATCGGCAAGCTTGCAATGAAAGGCAGAGAACCTTTGTTCCTTCCTTGCACTCCCAAGGGCTGTCTTGAACTTCTGTCCCGGAGTGGGATAAGCATAAAGGGGAAGAAGGCAGTGGTTGTTGGCAGAAGTAACATTGTTGGATTACCGGTTTCATTGCTGCTTTTGAAAGCAGATGCTACTGTTACCGTAGTCCATTCCCGCACACCAGATCCAGAGAGTTTCATTCGTGAAGCGGACATTATTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCGGGTGCTGCTGTCATTGATGTTGGCACAAATGCTATAGACGACCCGAGCAGAAAGTCAGGCTATAGATTGGTTGGAGATGTAGATTTCCAGGAGGCATGTAAGGTAGCCGGATGGGTAACTCCTGTTCCTGGTGGCGTCGGACCAATGACGGTTGCAATGCTACTCAAGAACACTTTGGATGGTGCTAAGCATGCTATTGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

300

Amino Acids

31.87

Weight (kDa)

7.67

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	3 cut(s)	128, 598, 632
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	124, 483, 821
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	277, 467, 565
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	4 cut(s)	146, 243, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	53, 165, 313, 409
AluI	AGCT	4 cut(s)	53, 165, 313, 409
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	3 cut(s)	118, 230, 736
ApeKI	GCWGC	5 cut(s)	26, 556, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	115, 144, 833
AsuC2I	CCSGG	4 cut(s)	119, 120, 478, 693
AvaI	CYCGRG	3 cut(s)	118, 230, 736
AvaII	GGWCC	3 cut(s)	115, 144, 833
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BccI	CCATC	6 cut(s)	32, 68, 99, 374, 798, 866
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 260, 294
BciT130I	CCWGG	4 cut(s)	148, 245, 782, 822
BclI	TGATCA	2 cut(s)	16, 669
BcnI	CCSGG	4 cut(s)	119, 120, 478, 693
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	3 cut(s)	648, 726, 754
BisI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	5 cut(s)	28, 558, 649, 652, 700
Bme1390I	CCNGG	8 cut(s)	119, 120, 148, 245, 478, 693, 782, 822
Bme18I	GGWCC	3 cut(s)	115, 144, 833
BmeT110I	CYCGRG	3 cut(s)	118, 230, 736
BmgT120I	GGNCC	3 cut(s)	115, 144, 833
BmiI	GGNNCC	2 cut(s)	117, 145
BmrFI	CCNGG	8 cut(s)	119, 120, 148, 245, 478, 693, 782, 822
BmsI	GCATC	3 cut(s)	14, 372, 562
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	4 cut(s)	119, 120, 478, 693
Bsa29I	ATCGAT	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	118, 243, 453
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 483, 821
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseBI	CCWGG	4 cut(s)	148, 245, 782, 822
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	118, 243, 453
BseGI	GGATG	6 cut(s)	60, 253, 379, 388, 809, 877
BseLI	CCNNNNNNNGG	3 cut(s)	124, 483, 821
BseMI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseMII	CTCAG	2 cut(s)	68, 69
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BshTI	ACCGGT	1 cut(s)	544
BshVI	ATCGAT	1 cut(s)	36
BsiHKCI	CYCGRG	3 cut(s)	118, 230, 736
BsiSI	CCGG	5 cut(s)	119, 478, 545, 692, 801
BslFI	GGGAC	5 cut(s)	101, 135, 157, 226, 460
BslI	CCNNNNNNNGG	3 cut(s)	124, 483, 821
BsmFI	GGGAC	5 cut(s)	101, 135, 157, 226, 460
BsmI	GAATGC	1 cut(s)	283
BsoBI	CYCGRG	3 cut(s)	118, 230, 736
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	16, 607, 669
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	3 cut(s)	128, 598, 632
BspCNI	CTCAG	2 cut(s)	67, 70
BspDI	ATCGAT	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	117, 145
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	602
BsrDI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	3 cut(s)	118, 243, 453
BssMI	GATC	3 cut(s)	16, 607, 669
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	453
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	4 cut(s)	148, 245, 782, 822
Bst4CI	ACNGT	3 cut(s)	580, 586, 844
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	190, 407, 411, 885
BstDEI	CTNAG	3 cut(s)	54, 78, 879
BstF5I	GGATG	6 cut(s)	60, 253, 379, 388, 809, 877
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	19, 610, 672
BstMBI	GATC	3 cut(s)	16, 607, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
BstNI	CCWGG	4 cut(s)	148, 245, 782, 822
BstNSI	RCATGY	2 cut(s)	792, 887
BstSCI	CCNGG	8 cut(s)	117, 118, 146, 243, 476, 691, 780, 820
BstSFI	CTRYAG	3 cut(s)	648, 726, 754
BstV1I	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BstZ17I	GTATAC	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	6 cut(s)	60, 253, 379, 388, 809, 877
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	4 cut(s)	190, 407, 411, 885
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	115, 144, 833
Cfr9I	CCCGGG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	293
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	4 cut(s)	175, 296, 789, 884
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	3 cut(s)	54, 78, 879
DpnI	GATC	3 cut(s)	18, 609, 671
DpnII	GATC	3 cut(s)	16, 607, 669
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	3 cut(s)	115, 144, 833
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	3 cut(s)	118, 230, 736
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	4 cut(s)	146, 243, 780, 820
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	178, 299, 792, 887
FaqI	GGGAC	5 cut(s)	101, 135, 157, 226, 460
FatI	CATG	4 cut(s)	174, 295, 788, 883
FauI	CCCGC	1 cut(s)	605
FbaI	TGATCA	2 cut(s)	16, 669
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
FokI	GGATG	6 cut(s)	47, 260, 375, 386, 816, 884
Fsp4HI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
HapII	CCGG	5 cut(s)	119, 478, 545, 692, 801
HgaI	GACGC	1 cut(s)	817
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	178, 299, 792, 887
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	5 cut(s)	119, 478, 545, 692, 801
Hpy166II	GTNNAC	2 cut(s)	268, 302
Hpy188I	TCNGA	5 cut(s)	16, 57, 65, 289, 833
Hpy188III	TCNNGA	6 cut(s)	269, 367, 464, 611, 626, 859
Hpy8I	GTNNAC	2 cut(s)	268, 302
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	4 cut(s)	145, 364, 449, 499
HpyCH4III	ACNGT	3 cut(s)	580, 586, 844
HpyCH4V	TGCA	5 cut(s)	111, 413, 447, 650, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
HpyF3I	CTNAG	3 cut(s)	54, 78, 879
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	178, 299, 792, 887
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	2 cut(s)	16, 669
Kzo9I	GATC	3 cut(s)	16, 607, 669
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	5 cut(s)	13, 543, 634, 662, 685
LweI	GCATC	3 cut(s)	14, 372, 562
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	3 cut(s)	527, 580, 808
MalI	GATC	3 cut(s)	18, 609, 671
MboI	GATC	3 cut(s)	16, 607, 669
MboII	GAAGA	1 cut(s)	514
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	4 cut(s)	517, 662, 745, 811
MnlI	CCTC	6 cut(s)	73, 236, 263, 331, 402, 778
MseI	TTAA	2 cut(s)	207, 333
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	5 cut(s)	119, 478, 545, 692, 801
MspR9I	CCNGG	8 cut(s)	119, 120, 148, 245, 478, 693, 782, 822
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	4 cut(s)	148, 245, 782, 822
MwoI	GCNNNNNNNGC	4 cut(s)	171, 319, 659, 884
NciI	CCSGG	4 cut(s)	119, 120, 478, 693
NdeII	GATC	3 cut(s)	16, 607, 669
NlaIII	CATG	4 cut(s)	178, 299, 792, 887
NlaIV	GGNNCC	2 cut(s)	117, 145
NspI	RCATGY	2 cut(s)	792, 887
PaeI	GCATGC	1 cut(s)	887
PctI	GAATGC	1 cut(s)	283
PfoI	TCCNGGA	2 cut(s)	476, 780
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	5 cut(s)	28, 558, 649, 652, 700
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	4 cut(s)	146, 243, 780, 820
PspGI	CCWGG	4 cut(s)	146, 243, 780, 820
PspN4I	GGNNCC	2 cut(s)	117, 145
PspPI	GGNCC	3 cut(s)	115, 144, 833
PspPPI	RGGWCCY	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	801, 833
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	207, 333
SatI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
Sau3AI	GATC	3 cut(s)	16, 607, 669
Sau96I	GGNCC	3 cut(s)	115, 144, 833
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	8 cut(s)	119, 120, 148, 245, 478, 693, 782, 822
SetI	ASST	9 cut(s)	55, 117, 167, 228, 255, 315, 411, 433, 798
SfaNI	GCATC	3 cut(s)	14, 372, 562
SfcI	CTRYAG	3 cut(s)	648, 726, 754
SinI	GGWCC	3 cut(s)	115, 144, 833
SmaI	CCCGGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	304
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	128, 598, 632
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	8 cut(s)	117, 118, 146, 243, 476, 691, 780, 820
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	580, 586, 844
TaqI	TCGA	3 cut(s)	36, 366, 378
TasI	AATT	1 cut(s)	272
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	207, 333
Tru9I	TTAA	2 cut(s)	207, 333
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	5 cut(s)	26, 556, 647, 650, 698
TspDTI	ATGAA	5 cut(s)	191, 377, 431, 540, 610
TspMI	CCCGGG	1 cut(s)	118
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	3 cut(s)	115, 144, 833
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	2 cut(s)	792, 887
XmaI	CCCGGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.