Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006330

Physical Location & Seq

Genomic Coordinates Forward (+)

21917215 .. 21919649

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G257500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCATCACAATCAGATCACAAGGCTGCGATAATCGATGGCAAAGCCATAGCGCAGACTATCCGGAACGAAATTGCTGAGGAAGTCCGCCATCTCTCCCAGAAATATGGCAAGGTTCCGGGACTGGCAGTAGTGATAGTAGGGAACAGAAAGGACTCCCAAAGCTATGTGAGCATGAAGCGAAAGGCATGTGCTGAAGTCGGCATTCTATCCTTGGACATTGACCTCCCTGAAGATGTGTCTCAAGTTGACCTCATTGCCAAAGTTCATGAATTAAACGCCAATCCCGATGTACATGGTATACTAGTTCAGCTTCCGTTGCCAAAGCATATAAATGAGGAGAAAGTGTTGAGTGAAATCAGCATTGAGAAGGATGTCGATGGCTTTCATCCTCTCAACATTGGCAAGCTTGCAATGAAAGGCAGAGAACCTTTATTCCTTCCTTGCACTCCCAAGGGCTGTCTGGAACTTCTGTCACGGAGTGGCATAAGCATAAAGGGAAAGAAGGCAGTGGTGGTGGGCAGAAGTAACATAGTTGGATTGCCGGTTTCGTTGCTGCTTTTGAAAGCAGATGCTACAGTTACCGTAGTCCATTCTCATTCTCATGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGGCAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCAGTTATCGATGTCGGCACAAATGCAATAGACGACTCGAGTAGAAAGTCTGGCTATAGATTGGTGGGAGATGTTGATTTCCAGGAAGCATGTAAGGTTGCTGGATGGGTAACTCCTGTGCCTGGAGGCGTCGGCCCAATGACTGTTGCAATGTTACTCAACAACACTTTGGATGGTGCTAAGCGTGTTATTGCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0019752 GO:0031323 GO:0034641 GO:0042558 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044030 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051186 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

300

Amino Acids

31.84

Weight (kDa)

7.12

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12290
fragaria_vesca	FvH4_2g25270 FvH4_2g25270 FvH4_2g25270 FvH4_2g25270
malus_domestica	MD11G1304100.v1.1
prunus_persica	Prupe.1G144700_v2.0.a1 Prupe.8G257500_v2.0.a1
pyrus_communis	pycom03g22520 pycom11g26580
rosa_chinensis	RchiOBHm_Chr3g0495451 RchiOBHm_Chr6g0293401
rosa_laevigata	RLG00000011949
rosa_multiflora	Rmu_sc0005599.1_g000023 Rmu_sc0006269.1_g000022
rosa_roxburghii	Rroxscaffold_7G00174180
rosa_rugosa	Rorug03G0273500 Rorug03G0273600 Rorug06G0235300 Rorug06G0235400 Rorug06G0235400
rosa_samantha	Rh3BG356400 Rh3CG353300 Rh3DG355500 Rh6CG362100
rosa_wichuraiana	Rw3G028050 Rw6G030290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	2 cut(s)	88, 632
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	216, 252
AcyI	GRCGYC	1 cut(s)	828
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	1 cut(s)	565
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	691, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	165, 313, 409
AluI	AGCT	3 cut(s)	165, 313, 409
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	736
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	1 cut(s)	832
ApeKI	GCWGC	5 cut(s)	26, 556, 647, 650, 698
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	833
AsuC2I	CCSGG	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	736
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BccI	CCATC	5 cut(s)	32, 99, 374, 798, 866
BciT130I	CCWGG	3 cut(s)	693, 782, 822
BclI	TGATCA	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	246
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	4 cut(s)	576, 648, 699, 754
BisI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	5 cut(s)	28, 558, 649, 652, 700
Bme1390I	CCNGG	4 cut(s)	120, 693, 782, 822
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	4 cut(s)	120, 693, 782, 822
BmsI	GCATC	2 cut(s)	14, 562
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	2 cut(s)	36, 708
BsaHI	GRCGYC	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	213, 453
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	4 cut(s)	255, 420, 669, 855
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	693, 782, 822
BseCI	ATCGAT	2 cut(s)	36, 708
BseDI	CCNNGG	2 cut(s)	213, 453
BseGI	GGATG	4 cut(s)	379, 388, 809, 877
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	4 cut(s)	255, 420, 669, 855
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BshFI	GGCC	1 cut(s)	834
BshVI	ATCGAT	2 cut(s)	36, 708
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	64, 119, 545
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	834
BsoBI	CYCGRG	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	16, 607, 669
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	2 cut(s)	88, 632
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	2 cut(s)	36, 708
BspEI	TCCGGA	1 cut(s)	63
BspHI	TCATGA	2 cut(s)	268, 604
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	2 cut(s)	652, 703
BspPI	GGATC	1 cut(s)	602
BsrDI	GCAATG	4 cut(s)	255, 420, 669, 855
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	2 cut(s)	213, 453
BssMI	GATC	3 cut(s)	16, 607, 669
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	2 cut(s)	213, 453
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	693, 782, 822
Bst4CI	ACNGT	3 cut(s)	580, 586, 844
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	407, 411, 660
BstDEI	CTNAG	2 cut(s)	78, 879
BstF5I	GGATG	4 cut(s)	379, 388, 809, 877
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	19, 610, 672
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	16, 607, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
BstNI	CCWGG	3 cut(s)	693, 782, 822
BstNSI	RCATGY	2 cut(s)	192, 792
BstSCI	CCNGG	4 cut(s)	118, 691, 780, 820
BstSFI	CTRYAG	4 cut(s)	576, 648, 699, 754
BstV1I	GCAGC	5 cut(s)	13, 543, 634, 662, 685
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstZ17I	GTATAC	1 cut(s)	302
Bsu15I	ATCGAT	2 cut(s)	36, 708
BsuRI	GGCC	1 cut(s)	834
BsuTUI	ATCGAT	2 cut(s)	36, 708
BtsCI	GGATG	4 cut(s)	379, 388, 809, 877
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	3 cut(s)	407, 411, 660
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	2 cut(s)	268, 604
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	833
ClaI	ATCGAT	2 cut(s)	36, 708
CseI	GACGC	1 cut(s)	817
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	6 cut(s)	175, 189, 269, 296, 605, 789
CviJI	RGCY	9 cut(s)	26, 47, 165, 313, 384, 409, 459, 753, 834
CviKI_1	RGCY	9 cut(s)	26, 47, 165, 313, 384, 409, 459, 753, 834
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	78, 879
DpnI	GATC	3 cut(s)	18, 609, 671
DpnII	GATC	3 cut(s)	16, 607, 669
DraIII	CACNNNGTG	1 cut(s)	482
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	213, 453
Eco57I	CTGAAG	2 cut(s)	216, 252
Eco88I	CYCGRG	1 cut(s)	736
EcoRII	CCWGG	3 cut(s)	691, 780, 820
EcoT14I	CCWWGG	2 cut(s)	213, 453
ErhI	CCWWGG	2 cut(s)	213, 453
FaeI	CATG	6 cut(s)	178, 192, 272, 299, 608, 792
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	6 cut(s)	174, 188, 268, 295, 604, 788
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
FokI	GGATG	4 cut(s)	375, 386, 816, 884
Fsp4HI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	1 cut(s)	834
HapII	CCGG	3 cut(s)	64, 119, 545
HgaI	GACGC	1 cut(s)	817
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	6 cut(s)	178, 192, 272, 299, 608, 792
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	155, 734
HpaII	CCGG	3 cut(s)	64, 119, 545
Hpy166II	GTNNAC	2 cut(s)	250, 302
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	7 cut(s)	64, 269, 287, 464, 605, 611, 626
Hpy8I	GTNNAC	2 cut(s)	250, 302
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	3 cut(s)	364, 449, 499
HpyCH4III	ACNGT	3 cut(s)	580, 586, 844
HpyCH4V	TGCA	7 cut(s)	413, 447, 650, 701, 725, 848, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
HpyF3I	CTNAG	2 cut(s)	78, 879
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	6 cut(s)	178, 192, 272, 299, 608, 792
HspAI	GCGC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	16, 607, 669
Lsp1109I	GCAGC	5 cut(s)	13, 543, 634, 662, 685
LweI	GCATC	2 cut(s)	14, 562
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	5 cut(s)	474, 527, 580, 808, 852
MalI	GATC	3 cut(s)	18, 609, 671
MboI	GATC	3 cut(s)	16, 607, 669
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	2 cut(s)	72, 272
MlyI	GAGTC	2 cut(s)	149, 728
MmeI	TCCRAC	2 cut(s)	517, 662
MnlI	CCTC	6 cut(s)	73, 236, 263, 331, 402, 818
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	2 cut(s)	333, 603
MspI	CCGG	3 cut(s)	64, 119, 545
MspR9I	CCNGG	4 cut(s)	120, 693, 782, 822
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	3 cut(s)	693, 782, 822
MwoI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	16, 607, 669
NlaIII	CATG	6 cut(s)	178, 192, 272, 299, 608, 792
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	474
NspI	RCATGY	2 cut(s)	192, 792
PaeR7I	CTCGAG	1 cut(s)	736
PagI	TCATGA	2 cut(s)	268, 604
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	204
PfoI	TCCNGGA	2 cut(s)	118, 780
PkrI	GCNGC	5 cut(s)	28, 558, 649, 652, 700
PleI	GAGTC	2 cut(s)	149, 728
PpsI	GAGTC	2 cut(s)	149, 728
Psp6I	CCWGG	3 cut(s)	691, 780, 820
PspGI	CCWGG	3 cut(s)	691, 780, 820
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	833
PspXI	VCTCGAGB	1 cut(s)	736
PstI	CTGCAG	2 cut(s)	652, 703
PstNI	CAGNNNCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	333, 603
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	5 cut(s)	27, 557, 648, 651, 699
Sau3AI	GATC	3 cut(s)	16, 607, 669
Sau96I	GGNCC	1 cut(s)	833
SchI	GAGTC	2 cut(s)	149, 728
ScrFI	CCNGG	4 cut(s)	120, 693, 782, 822
SetI	ASST	9 cut(s)	117, 167, 228, 255, 315, 411, 433, 697, 798
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	2 cut(s)	14, 562
SfcI	CTRYAG	4 cut(s)	576, 648, 699, 754
Sfr274I	CTCGAG	1 cut(s)	736
SlaI	CTCGAG	1 cut(s)	736
SmiMI	CAYNNNNRTG	2 cut(s)	333, 603
SmlI	CTYRAG	2 cut(s)	243, 736
SmoI	CTYRAG	2 cut(s)	243, 736
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	2 cut(s)	72, 272
SsiI	CCGC	2 cut(s)	88, 632
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	118, 691, 780, 820
StyI	CCWWGG	2 cut(s)	213, 453
TaaI	ACNGT	3 cut(s)	580, 586, 844
TaqI	TCGA	4 cut(s)	36, 378, 708, 737
TasI	AATT	2 cut(s)	72, 272
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	5 cut(s)	26, 556, 647, 650, 698
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	5 cut(s)	191, 257, 285, 377, 431
TspGWI	ACGGA	2 cut(s)	306, 493
TspRI	CASTG	1 cut(s)	516
XceI	RCATGY	2 cut(s)	192, 792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.