Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007584

Physical Location & Seq

Genomic Coordinates Reverse (-)

8576078 .. 8577022

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCAACCAGCGCTAGAAAGAGTCACTGGAACAGAGCACAGCCATATTTTGCGAGTTCCTTTCAGATCAGAGAATGGTATTCTTCGTAAATGGATATCAAGGTTTGATGTATGGCCTTATTTGGAGACCTTTGCTGAGGATGTTGGAGGTGAAATTACTGCTGAGTTACAGGGATATCCATATTTTATTATTGGAAATTACAGTGATGGAAATCTTGTTGCCTCTTTGTTGGCTTATAAAATGGGGGTTACACAGTGCACCATCGCGCATGCTTTGGAGAAAACAAAATATCCGGATTCAGATATCTACTGGAAAAAATATTATGAGAAATATCACTTCTCATGTCAATTCACAGCTGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

121

Amino Acids

14.05

Weight (kDa)

5.75

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	4 - 121	3.8e-62	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02280
fragaria_vesca	FvH4_2g26000 FvH4_2g26000
malus_domestica	MD11G1307000.v1.1
prunus_persica	Prupe.8G264300_v2.0.a1
pyrus_communis	pycom11g26860
rosa_chinensis	RchiOBHm_Chr3g0465391 RchiOBHm_Chr6g0294361
rosa_laevigata	RLG00000011877
rosa_multiflora	Rmu_co8254571.1_g000001 Rmu_sc0005369.1_g000012 Rmu_sc0016833.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173440
rosa_rugosa	Rorug03G0273600 Rorug06G0243800
rosa_samantha	Rh2AG100600 Rh3BG141500 Rh3CG142600 Rh3DG142600 Rh6AG356400 Rh6BG363100 Rh6CG370400 Rh6DG356900
rosa_wichuraiana	Rw6G031060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccII	CGCG	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	292
AfeI	AGCGCT	1 cut(s)	12
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
Alw21I	GWGCWC	2 cut(s)	39, 260
Alw26I	GTCTC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	1 cut(s)	113
ApaLI	GTGCAC	1 cut(s)	256
AspLEI	GCGC	2 cut(s)	13, 268
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	39, 260
BbvCI	CCTCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	200, 269
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	31, 314
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	292
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	126, 153
BseNI	ACTGG	2 cut(s)	31, 314
BseSI	GKGCMC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	39, 260
BsiSI	CCGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	39, 260
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	127, 154
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	31, 314
BssMI	GATC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	203, 255
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	135, 162
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 268
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	24, 208, 260
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	13, 268
CviAII	CATG	2 cut(s)	269, 342
CviJI	RGCY	4 cut(s)	42, 115, 233, 356
CviKI_1	RGCY	4 cut(s)	42, 115, 233, 356
DdeI	CTNAG	2 cut(s)	135, 162
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	3 cut(s)	96, 176, 304
Eco47III	AGCGCT	1 cut(s)	12
EcoRV	GATATC	3 cut(s)	96, 176, 304
FaeI	CATG	2 cut(s)	272, 345
FaiI	YATR	7 cut(s)	45, 112, 181, 237, 270, 324, 343
FatI	CATG	2 cut(s)	268, 341
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	12, 267
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	2 cut(s)	13, 268
Hin1II	CATG	2 cut(s)	272, 345
Hin6I	GCGC	2 cut(s)	11, 266
HinP1I	GCGC	2 cut(s)	11, 266
HinfI	GANTC	2 cut(s)	21, 296
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	65, 70, 301
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	203, 255
HpyCH4V	TGCA	2 cut(s)	4, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	135, 162
Hsp92II	CATG	2 cut(s)	272, 345
HspAI	GCGC	2 cut(s)	11, 266
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	12, 21, 155, 295, 306
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	3 cut(s)	22, 165, 247
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	39, 260
MluCI	AATT	3 cut(s)	153, 196, 347
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	130, 140, 232
MroI	TCCGGA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	272, 345
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	356
Sau3AI	GATC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	39, 260
SetI	ASST	5 cut(s)	104, 131, 151, 358, 363
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	3 cut(s)	153, 196, 347
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	203, 255
TasI	AATT	3 cut(s)	153, 196, 347
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	3 cut(s)	31, 208, 260
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspRI	CASTG	3 cut(s)	31, 208, 260
VneI	GTGCAC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.