Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8254571.1

Orthogroup ID

OG0007584

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 532

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8254571.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggcgaatcgcgctaagctgactcgaataccgagcatgagagatcgcgtggaggacactctctccgctcaccgcaacgaaatcgttgcgcttctctccaggtatgtggctcaaggaaaagggatactgcaaccgcatgacctgatcgatgagctcgagaaagtgatcactgatgacaaagcgaggctgaagctcagcgaaggtccttttagtgaagtcctcaagtcggcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

78

Amino Acids

8.78

Weight (kDa)

8.11

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02280
fragaria_vesca	FvH4_2g26000 FvH4_2g26000
malus_domestica	MD11G1307000.v1.1
prunus_persica	Prupe.8G264300_v2.0.a1
pyrus_communis	pycom11g26860
rosa_chinensis	RchiOBHm_Chr3g0465391 RchiOBHm_Chr6g0294361
rosa_laevigata	RLG00000011877
rosa_multiflora	Rmu_co8254571.1_g000001 Rmu_sc0005369.1_g000012 Rmu_sc0016833.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173440
rosa_rugosa	Rorug03G0273600 Rorug06G0243800
rosa_samantha	Rh2AG100600 Rh3BG141500 Rh3CG142600 Rh3DG142600 Rh6AG356400 Rh6BG363100 Rh6CG370400 Rh6DG356900
rosa_wichuraiana	Rw6G031060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	2 cut(s)	12, 48
AciI	CCGC	3 cut(s)	66, 73, 134
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	19, 154, 193
AluI	AGCT	3 cut(s)	19, 154, 193
Alw21I	GWGCWC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	14, 91
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BcgI	CGANNNNNNTGC	4 cut(s)	64, 68, 98, 102
BciT130I	CCWGG	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	117
BlpI	GCTNAGC	2 cut(s)	15, 194
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	82
Bpu1102I	GCTNAGC	2 cut(s)	15, 194
BpuEI	CTTGAG	2 cut(s)	96, 206
Bsa29I	ATCGAT	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	12, 48
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	43, 144, 165
Bsp1720I	GCTNAGC	2 cut(s)	15, 194
BspACI	CCGC	3 cut(s)	66, 73, 134
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	12, 48
BsrBI	CCGCTC	1 cut(s)	68
BssMI	GATC	3 cut(s)	43, 144, 165
Bst2UI	CCWGG	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	15, 194
BstFNI	CGCG	2 cut(s)	12, 48
BstHHI	GCGC	2 cut(s)	14, 91
BstKTI	GATC	3 cut(s)	46, 147, 168
BstMBI	GATC	3 cut(s)	43, 144, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	2 cut(s)	12, 48
BstXI	CCANNNNNNTGG	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	168
CfoI	GCGC	2 cut(s)	14, 91
Cfr13I	GGNCC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	147
CviAII	CATG	2 cut(s)	37, 137
CviJI	RGCY	5 cut(s)	19, 110, 154, 187, 193
CviKI_1	RGCY	5 cut(s)	19, 110, 154, 187, 193
DdeI	CTNAG	2 cut(s)	15, 194
DpnI	GATC	3 cut(s)	45, 146, 167
DpnII	GATC	3 cut(s)	43, 144, 165
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	2 cut(s)	40, 140
FaiI	YATR	3 cut(s)	38, 105, 138
FatI	CATG	2 cut(s)	36, 136
FbaI	TGATCA	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	156
GlaI	GCGC	2 cut(s)	13, 90
GsuI	CTGGAG	1 cut(s)	82
HhaI	GCGC	2 cut(s)	14, 91
Hin1II	CATG	2 cut(s)	40, 140
Hin6I	GCGC	2 cut(s)	12, 89
HinP1I	GCGC	2 cut(s)	12, 89
HinfI	GANTC	2 cut(s)	7, 22
HphI	GGTGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	15, 194
Hsp92II	CATG	2 cut(s)	40, 140
HspAI	GCGC	2 cut(s)	12, 89
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	43, 144, 165
LpnPI	CCDG	3 cut(s)	85, 112, 155
MalI	GATC	3 cut(s)	45, 146, 167
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	3 cut(s)	43, 144, 165
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	46, 177, 230
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	12, 48
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	43, 144, 165
NlaIII	CATG	2 cut(s)	40, 140
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	43, 144, 165
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	21, 104, 144, 156, 195, 205
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	111, 155, 221
SmoI	CTYRAG	3 cut(s)	111, 155, 221
SsiI	CCGC	3 cut(s)	66, 73, 134
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	98
TaqI	TCGA	3 cut(s)	25, 147, 156
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	175
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.