Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007584

Physical Location & Seq

Genomic Coordinates Forward (+)

12168937 .. 12172517

Gene Structure 3581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCTGGGTCTTTTCCGGTCTGACTTGGAGCTAATGAGGAAGCTGTTGATGACTGACCCGAGTAGGTGCGGTGGAGCTGGATCTGGGATTGGCTGCAGGTGCGGATGCCTAAAGAGCATATCCAAGCTTCAAGCAGCTTTGGTTACGGCCGAGGATAATCTTTCTACACTTCCATCTGAGCCACCCTATTGTGAGTTTGAATATGTATTACAAGGATTGGGTTTTGAGCGAGGTTGGGGAGACACTACAGCAAAGGTATTGGAGTTGATACATCTTCTCCGAGATATCGTAAAGGCTTCTGATCCTACTACCTTGAAGACATTTCTAGGGAAAGTACCAATGGTTTTTAATGATGTCATTTTGTCTCCACATGGATACTTTGGGCAAGAGAATGTCTTAGGCTTACCAGACACCGATGGGCAGGTTGTCTATATACTGGACCAAGTGTGTGCCCTCGAGAATGAAAGGCGCCAAAAAGTCACTGAAACTACATGCAACCAGCGGCTAGAAAGAGTCACTGGAACAGAGCACAGCCATATTCTGCGAGTTCCTTTCAGATCAGAGAATGGAATTCTTCGTAAATGGATATCAAGGTTTGATGTATGGTCTTATTTGGAGACCTTTGCTGAGGATGTTGCAGGTGAAACTACTGCTAAGTTACAGGGACATCCAGATTTTATTATTGGAAATTACAGTTATGGAAATCTTGTTGCATCTTTGTTGGCTTATAAAATGGGGGTTACACAGTGCACCATCGCGCATGCTTTGGAGAAAACAAAATATCCGGATTCAGATATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

268

Amino Acids

29.79

Weight (kDa)

5.57

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_EPBD	PF24862	38 - 82	3.3e-10	Sucrose synthase EPBD domain
GT-B_Sucrose_synth	PF00862	105 - 161	3e-22	Sucrose synthase first GT-B domain
GT-B_Sucrose_synth	PF00862	161 - 268	2.8e-51	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02280
fragaria_vesca	FvH4_2g26000 FvH4_2g26000
malus_domestica	MD11G1307000.v1.1
prunus_persica	Prupe.8G264300_v2.0.a1
pyrus_communis	pycom11g26860
rosa_chinensis	RchiOBHm_Chr3g0465391 RchiOBHm_Chr6g0294361
rosa_laevigata	RLG00000011877
rosa_multiflora	Rmu_co8254571.1_g000001 Rmu_sc0005369.1_g000012 Rmu_sc0016833.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173440
rosa_rugosa	Rorug03G0273600 Rorug06G0243800
rosa_samantha	Rh2AG100600 Rh3BG141500 Rh3CG142600 Rh3DG142600 Rh6AG356400 Rh6BG363100 Rh6CG370400 Rh6DG356900
rosa_wichuraiana	Rw6G031060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AarI	CACCTGC	2 cut(s)	90, 632
Acc36I	ACCTGC	3 cut(s)	90, 415, 632
AccB1I	GGYRCC	1 cut(s)	471
AccII	CGCG	1 cut(s)	761
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	3 cut(s)	72, 105, 505
AclWI	GGATC	2 cut(s)	91, 299
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	134, 203, 319
AluBI	AGCT	5 cut(s)	34, 46, 80, 130, 140
AluI	AGCT	5 cut(s)	34, 46, 80, 130, 140
Alw21I	GWGCWC	2 cut(s)	534, 755
Alw26I	GTCTC	3 cut(s)	237, 372, 614
Alw44I	GTGCAC	1 cut(s)	751
AlwI	GGATC	2 cut(s)	91, 299
Ama87I	CYCGRG	2 cut(s)	61, 458
Aor13HI	TCCGGA	1 cut(s)	787
AoxI	GGCC	1 cut(s)	150
ApaLI	GTGCAC	1 cut(s)	751
ApeKI	GCWGC	2 cut(s)	96, 137
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	474, 763
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	2 cut(s)	61, 458
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	2 cut(s)	457, 755
BanI	GGYRCC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	534, 755
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	83, 149
BccI	CCATC	3 cut(s)	184, 413, 764
BceAI	ACGGC	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	237, 372, 614
BfaI	CTAG	3 cut(s)	329, 509, 805
BfmI	CTRYAG	2 cut(s)	97, 249
BfoI	RGCGCY	1 cut(s)	475
BfuAI	ACCTGC	3 cut(s)	90, 415, 632
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	97, 138, 506
BlsI	GCNGC	3 cut(s)	98, 139, 507
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	2 cut(s)	61, 458
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	473
BmsI	GCATC	2 cut(s)	98, 725
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	18, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse1I	ACTGG	2 cut(s)	444, 526
BseAI	TCCGGA	1 cut(s)	787
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	113, 640, 670
BseMII	CTCAG	2 cut(s)	171, 621
BseNI	ACTGG	2 cut(s)	444, 526
BseSI	GKGCMC	2 cut(s)	457, 755
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	83, 149
Bsh1236I	CGCG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	534, 755
BsiHKCI	CYCGRG	2 cut(s)	61, 458
BsiSI	CCGG	2 cut(s)	19, 788
BslFI	GGGAC	1 cut(s)	681
BsmAI	GTCTC	3 cut(s)	237, 372, 614
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	2 cut(s)	61, 458
Bsp1286I	GDGCHC	3 cut(s)	457, 534, 755
Bsp13I	TCCGGA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	83, 304, 560
BspACI	CCGC	3 cut(s)	72, 105, 505
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	172, 622
BspEI	TCCGGA	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	761
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	101
BspMI	ACCTGC	3 cut(s)	90, 415, 632
BspPI	GGATC	2 cut(s)	91, 299
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	444, 526
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	83, 304, 560
BssNI	GRCGYC	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	698, 750
BstACI	GRCGYC	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	4 cut(s)	180, 400, 630, 657
BstF5I	GGATG	3 cut(s)	113, 640, 670
BstFNI	CGCG	1 cut(s)	761
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	2 cut(s)	474, 763
BstKTI	GATC	3 cut(s)	86, 307, 563
BstMAI	GTCTC	3 cut(s)	237, 372, 614
BstMBI	GATC	3 cut(s)	83, 304, 560
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 117
BstNSI	RCATGY	2 cut(s)	498, 767
BstSFI	CTRYAG	2 cut(s)	97, 249
BstSLI	GKGCMC	2 cut(s)	457, 755
BstUI	CGCG	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	83, 149
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	742
BtsCI	GGATG	3 cut(s)	113, 640, 670
BtsIMutI	CAGTG	3 cut(s)	483, 519, 755
BveI	ACCTGC	3 cut(s)	90, 415, 632
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	2 cut(s)	474, 763
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	3 cut(s)	374, 495, 764
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	180, 400, 630, 657
DinI	GGCGCC	1 cut(s)	473
DpnI	GATC	3 cut(s)	85, 306, 562
DpnII	GATC	3 cut(s)	83, 304, 560
EaeI	YGGCCR	1 cut(s)	150
EagI	CGGCCG	1 cut(s)	150
EclXI	CGGCCG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	614
Eco32I	GATATC	3 cut(s)	289, 591, 799
Eco47I	GGWCC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	61, 458
EcoRI	GAATTC	1 cut(s)	573
EcoRV	GATATC	3 cut(s)	289, 591, 799
EgeI	GGCGCC	1 cut(s)	473
EheI	GGCGCC	1 cut(s)	473
FaeI	CATG	3 cut(s)	377, 498, 767
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	3 cut(s)	373, 494, 763
Fnu4HI	GCNGC	3 cut(s)	97, 138, 506
FokI	GGATG	3 cut(s)	120, 647, 657
Fsp4HI	GCNGC	3 cut(s)	97, 138, 506
FspBI	CTAG	3 cut(s)	329, 509, 805
GlaI	GCGC	2 cut(s)	473, 762
GluI	GCNGC	3 cut(s)	97, 138, 506
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	19, 788
HhaI	GCGC	2 cut(s)	474, 763
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	377, 498, 767
Hin6I	GCGC	2 cut(s)	472, 761
HinP1I	GCGC	2 cut(s)	472, 761
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	516, 791
HpaII	CCGG	2 cut(s)	19, 788
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	7 cut(s)	25, 181, 284, 304, 560, 565, 796
Hpy188III	TCNNGA	3 cut(s)	460, 674, 788
Hpy8I	GTNNAC	1 cut(s)	753
HpyCH4III	ACNGT	2 cut(s)	698, 750
HpyCH4V	TGCA	5 cut(s)	99, 498, 641, 716, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 117
HpyF3I	CTNAG	4 cut(s)	180, 400, 630, 657
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	3 cut(s)	377, 498, 767
HspAI	GCGC	2 cut(s)	472, 761
KasI	GGCGCC	1 cut(s)	471
Kpn2I	TCCGGA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	83, 304, 560
LmnI	GCTCC	2 cut(s)	31, 77
Lsp1109I	GCAGC	2 cut(s)	83, 149
LweI	GCATC	2 cut(s)	98, 725
MaeI	CTAG	3 cut(s)	329, 509, 805
MaeIII	GTNAC	5 cut(s)	145, 481, 517, 660, 742
MalI	GATC	3 cut(s)	85, 306, 562
MboI	GATC	3 cut(s)	83, 304, 560
MboII	GAAGA	3 cut(s)	269, 331, 569
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	3 cut(s)	457, 534, 755
MluCI	AATT	2 cut(s)	573, 691
Mly113I	GGCGCC	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	525
MnlI	CCTC	5 cut(s)	33, 148, 227, 467, 625
MroI	TCCGGA	1 cut(s)	787
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	2 cut(s)	19, 788
MvnI	CGCG	1 cut(s)	761
MwoI	GCNNNNNNNGC	2 cut(s)	102, 117
NarI	GGCGCC	1 cut(s)	472
NdeII	GATC	3 cut(s)	83, 304, 560
NlaIII	CATG	3 cut(s)	377, 498, 767
NlaIV	GGNNCC	1 cut(s)	473
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	481, 517
NspI	RCATGY	2 cut(s)	498, 767
PaeI	GCATGC	1 cut(s)	767
PaeR7I	CTCGAG	1 cut(s)	458
PaqCI	CACCTGC	2 cut(s)	90, 632
PfeI	GAWTC	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	98, 139, 507
PleI	GAGTC	1 cut(s)	524
PluTI	GGCGCC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	97, 138, 506
Sau3AI	GATC	3 cut(s)	83, 304, 560
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	3 cut(s)	457, 534, 755
SfaNI	GCATC	2 cut(s)	98, 725
SfcI	CTRYAG	2 cut(s)	97, 249
SfoI	GGCGCC	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	442
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	767
Sse9I	AATT	2 cut(s)	573, 691
SsiI	CCGC	3 cut(s)	72, 105, 505
SspDI	GGCGCC	1 cut(s)	471
SspMI	CTAG	3 cut(s)	329, 509, 805
TaaI	ACNGT	2 cut(s)	698, 750
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	573, 691
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	490, 526, 755
TseFI	GTSAC	2 cut(s)	481, 517
TseI	GCWGC	2 cut(s)	96, 137
Tsp45I	GTSAC	2 cut(s)	481, 517
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	3 cut(s)	490, 526, 755
VneI	GTGCAC	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	2 cut(s)	498, 767
XhoI	CTCGAG	1 cut(s)	458
XspI	CTAG	3 cut(s)	329, 509, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.