Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007584

Physical Location & Seq

Genomic Coordinates Forward (+)

11828411 .. 11828875

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTTTTTAATGATGTCATTTTGTCTCCACATGGATACTTTGGGCAAGAGAATGTCTTAGGCTTACCAGACACCGATGGGCAGGTTGTCTATATACTGGACCAAGTGTGTGCCCTCGAGAATGAAAGGCGCCAAAAAGTCACTGAAACTACATGCAACCAGCGGCTAGAAAGAGTCACTGGAACAGAGCACAGCCATATTCTGCGAGTTCCTTTCAGATCAGAGAATGGAATTCTTCGTAAATGGATATCAAGGTTTGATGTATGGTCTTATTTGGAGACCTTTGCTGAGGATGTTGCAGGTGAAACTACTGCTAAGTTACAGGGACATCCAGATTTTATTATTGGAAATTACAGTTATGGAAATCTTGTTGCATCTTTGTTGGCTTATAAAATGGGGGTTACACAGTGCACCATCGCGCATGCTTTGGAGAAAACAAAATATCCGGATTCAGATATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

154

Amino Acids

17.49

Weight (kDa)

5.3

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	1 - 47	4.9e-18	Sucrose synthase first GT-B domain
GT-B_Sucrose_synth	PF00862	47 - 154	6.8e-52	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02280
fragaria_vesca	FvH4_2g26000 FvH4_2g26000
malus_domestica	MD11G1307000.v1.1
prunus_persica	Prupe.8G264300_v2.0.a1
pyrus_communis	pycom11g26860
rosa_chinensis	RchiOBHm_Chr3g0465391 RchiOBHm_Chr6g0294361
rosa_laevigata	RLG00000011877
rosa_multiflora	Rmu_co8254571.1_g000001 Rmu_sc0005369.1_g000012 Rmu_sc0016833.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173440
rosa_rugosa	Rorug03G0273600 Rorug06G0243800
rosa_samantha	Rh2AG100600 Rh3BG141500 Rh3CG142600 Rh3DG142600 Rh6AG356400 Rh6BG363100 Rh6CG370400 Rh6DG356900
rosa_wichuraiana	Rw6G031060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	2 cut(s)	73, 290
AccB1I	GGYRCC	1 cut(s)	129
AccII	CGCG	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	130
Alw21I	GWGCWC	2 cut(s)	192, 413
Alw26I	GTCTC	2 cut(s)	30, 272
Alw44I	GTGCAC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	132, 421
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	115, 413
BanI	GGYRCC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	192, 413
BbvCI	CCTCAGC	1 cut(s)	288
BccI	CCATC	2 cut(s)	71, 422
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	30, 272
BfaI	CTAG	2 cut(s)	167, 463
BfoI	RGCGCY	1 cut(s)	133
BfuAI	ACCTGC	2 cut(s)	73, 290
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	445
Bse1I	ACTGG	2 cut(s)	102, 184
BseAI	TCCGGA	1 cut(s)	445
BseGI	GGATG	2 cut(s)	298, 328
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	102, 184
BseSI	GKGCMC	2 cut(s)	115, 413
Bsh1236I	CGCG	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	192, 413
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	30, 272
BsmFI	GGGAC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	115, 192, 413
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	2 cut(s)	73, 290
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	102, 184
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	356, 408
BstACI	GRCGYC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	58, 288, 315
BstF5I	GGATG	2 cut(s)	298, 328
BstFNI	CGCG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	132, 421
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	30, 272
BstMBI	GATC	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	156, 425
BstSLI	GKGCMC	2 cut(s)	115, 413
BstUI	CGCG	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	298, 328
BtsIMutI	CAGTG	3 cut(s)	141, 177, 413
BveI	ACCTGC	2 cut(s)	73, 290
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	2 cut(s)	132, 421
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	3 cut(s)	32, 153, 422
CviJI	RGCY	4 cut(s)	63, 166, 195, 386
CviKI_1	RGCY	4 cut(s)	63, 166, 195, 386
DdeI	CTNAG	3 cut(s)	58, 288, 315
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	2 cut(s)	249, 457
Eco47I	GGWCC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	231
EcoRV	GATATC	2 cut(s)	249, 457
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
FaeI	CATG	3 cut(s)	35, 156, 425
FaiI	YATR	9 cut(s)	33, 93, 95, 154, 198, 265, 360, 390, 423
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	3 cut(s)	31, 152, 421
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	2 cut(s)	305, 315
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	167, 463
GlaI	GCGC	2 cut(s)	131, 420
GluI	GCNGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	133
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	2 cut(s)	132, 421
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	35, 156, 425
Hin6I	GCGC	2 cut(s)	130, 419
HinP1I	GCGC	2 cut(s)	130, 419
HinfI	GANTC	2 cut(s)	174, 449
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	218, 223, 454
Hpy188III	TCNNGA	3 cut(s)	118, 332, 446
Hpy8I	GTNNAC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	356, 408
HpyCH4V	TGCA	4 cut(s)	156, 299, 374, 411
HpyF3I	CTNAG	3 cut(s)	58, 288, 315
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	35, 156, 425
HspAI	GCGC	2 cut(s)	130, 419
KasI	GGCGCC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	68, 81, 83, 165, 173, 285, 308, 345, 459
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	2 cut(s)	167, 463
MaeIII	GTNAC	4 cut(s)	139, 175, 318, 400
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	3 cut(s)	115, 192, 413
MluCI	AATT	2 cut(s)	231, 349
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	125, 283
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	419
NarI	GGCGCC	1 cut(s)	130
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	35, 156, 425
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	139, 175
NspI	RCATGY	2 cut(s)	156, 425
PaeI	GCATGC	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	115, 192, 413
SetI	ASST	4 cut(s)	87, 257, 284, 304
SfaNI	GCATC	1 cut(s)	383
SfoI	GGCGCC	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	2 cut(s)	231, 349
SsiI	CCGC	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	2 cut(s)	167, 463
TaaI	ACNGT	2 cut(s)	356, 408
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	231, 349
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	3 cut(s)	148, 184, 413
TseFI	GTSAC	2 cut(s)	139, 175
Tsp45I	GTSAC	2 cut(s)	139, 175
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	148, 184, 413
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	2 cut(s)	156, 425
XhoI	CTCGAG	1 cut(s)	116
XspI	CTAG	2 cut(s)	167, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.