RchiOBHm_Chr3g0477021
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006756
Physical Location & Seq
Forward (+)
22901478 .. 22901918
441 bp
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UTR
Exon/CDS
Intron
PRQ44237

Sequence Viewer

Length: 381 bp
ATGTTGATTGCAGAAACCAAGTACAGTAAGAAAACAACTGAACAGATGGATGTGTACAGCTTTGGTGTTGCACTATTGGAGCTAGTGAGGGGTCGGCAAGCGGAGCAAGCATTACAATCTGAGTCTCTCGATATAGTGAAGTGGGTACGACGAAAGGTCAACATTACAAATGGAGAGGTCCAAGTTCTTGATCCCAAGATAACAAGTTCAGCCCAGCAAGAGATGCTAGTAGCTCTAGAAATTACTCTGCATTGCACTTCTGTGATGCCGGAAAAGAGACCATCAATGTCTGAAGTTGTGAAATCACTTCAGTCCCTCGACTCGATGACTCAAACTGCTGTTGTAGACTTTTCTGCCTTCGAGGAGCATTCGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

5.17

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 7 - 103 7.9e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 345
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 293, 312
AfaI GTAC 3 cut(s) 23, 56, 147
AhdI GACNNNNNGTC 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 3 cut(s) 60, 82, 233
AluI AGCT 3 cut(s) 60, 82, 233
Alw26I GTCTC 2 cut(s) 129, 271
AlwI GGATC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BccI CCATC 2 cut(s) 40, 289
BcoDI GTCTC 2 cut(s) 129, 271
BfaI CTAG 3 cut(s) 83, 227, 236
Bme18I GGWCC 1 cut(s) 178
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 178
BmsI GCATC 2 cut(s) 213, 255
BsaI GGTCTC 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 250
BseGI GGATG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 129, 271
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 54
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 99, 108
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 129, 271
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 103, 107, 223
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 99, 108
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 22, 55, 146
CviJI RGCY 4 cut(s) 60, 82, 212, 233
CviKI_1 RGCY 4 cut(s) 60, 82, 212, 233
CviQI GTAC 3 cut(s) 22, 55, 146
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DriI GACNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 293, 312
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 345
FokI GGATG 1 cut(s) 62
FspBI CTAG 3 cut(s) 83, 227, 236
GsaI CCCAGC 1 cut(s) 217
HapII CCGG 1 cut(s) 269
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 122, 320, 328
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 3 cut(s) 55, 160, 346
Hpy188I TCNGA 3 cut(s) 121, 292, 380
Hpy188III TCNNGA 3 cut(s) 128, 188, 236
Hpy8I GTNNAC 3 cut(s) 55, 160, 346
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 11, 71, 250, 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 107, 223
HpyF3I CTNAG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 79, 103, 364
LpnPI CCDG 2 cut(s) 227, 282
LweI GCATC 2 cut(s) 213, 255
MaeI CTAG 3 cut(s) 83, 227, 236
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MluCI AATT 1 cut(s) 240
MlyI GAGTC 3 cut(s) 131, 314, 322
MnlI CCTC 4 cut(s) 81, 169, 326, 355
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 367
MwoI GCNNNNNNNGC 3 cut(s) 103, 107, 223
NdeII GATC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 260
PctI GAATGC 1 cut(s) 367
PleI GAGTC 3 cut(s) 130, 314, 322
PpsI GAGTC 3 cut(s) 130, 314, 322
PspFI CCCAGC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 178
RsaI GTAC 3 cut(s) 23, 56, 147
RsaNI GTAC 3 cut(s) 22, 55, 146
RseI CAYNNNNRTG 1 cut(s) 260
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 3 cut(s) 131, 314, 322
SetI ASST 5 cut(s) 62, 84, 159, 180, 235
SfaNI GCATC 2 cut(s) 213, 255
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 1 cut(s) 240
SsiI CCGC 1 cut(s) 101
SspMI CTAG 3 cut(s) 83, 227, 236
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 4 cut(s) 129, 318, 323, 360
TasI AATT 1 cut(s) 240
TatI WGTACW 2 cut(s) 21, 54
VpaK11BI GGWCC 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 3 cut(s) 83, 227, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.