Rh3DG234600
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
22422938 .. 22424635
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG234600.1

Sequence Viewer

Length: 642 bp
ATGGCACAACCAGCTGAAAATTTTGATACTGCTGCTACAATTGCTTTAATTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGTCTTGTCGAAGAAGACAGCAGAAATGCAAGGGCCTACTACAAGAGCAGATGGTGTCAGAACTCCTTTGCTGGAGATAGTTCTGGACGAGCTAACTCACGATAAGGATATTCTTGACTCATTTCTTCAGCTTTCAACACGAATAAAATGGCCTAAATTAGCAATTCTGGGAGACGCTGCCTTTCGGTCAACAATGGCTTCAGAATCTGCTTCCTCCTGTTACAATGCACCAGAAACCAAGTACAGTAAGAAAGCAACTGAACAGATGGATGTGTACAGCTTTGGTGTTGTACTATTGGAGCTATTGAGGGGTCGGCAAGCGGAGCAAGTCTTACAATCTGAGTCTCTCGATATAGTGAAGTGGGTACAACGAAAGGTCAACATTACAAATGGAGAGGTCCAAGTTCTTGATCCCAAGATAACAAGTTCAGCCCAGCAAGAGATGCTAGTAGCTCTAGAAATTACTCTGCATTGCACTTCTGTGATGCCAGAAAAGAGACCATCAATGTCTGAAGCTGTGAAATCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

213

Amino Acids

23.64

Weight (kDa)

5.35

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 101 - 211 1.7e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 105 - 213 4.8e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 3 cut(s) 221, 294, 642
AfaI GTAC 4 cut(s) 353, 386, 402, 477
AgsI TTSAA 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 8 cut(s) 14, 109, 202, 241, 390, 412, 563, 626
AluI AGCT 8 cut(s) 14, 109, 202, 241, 390, 412, 563, 626
Alw26I GTCTC 3 cut(s) 276, 459, 601
AlwI GGATC 1 cut(s) 515
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 143, 260
ApeKI GCWGC 2 cut(s) 32, 287
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 143, 508
AvaII GGWCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 19, 274
BccI CCATC 3 cut(s) 155, 370, 619
BcoDI GTCTC 3 cut(s) 276, 459, 601
BfaI CTAG 2 cut(s) 557, 566
BisI GCNGC 2 cut(s) 33, 288
BlsI GCNGC 2 cut(s) 34, 289
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 2 cut(s) 143, 508
BmsI GCATC 2 cut(s) 543, 585
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 580
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 19, 274
BseYI CCCAGC 1 cut(s) 543
BshFI GGCC 2 cut(s) 145, 262
BsmAI GTCTC 3 cut(s) 276, 459, 601
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 2 cut(s) 145, 262
Bso31I GGTCTC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 520
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 145, 262
BspCNI CTCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 384
BssMI GATC 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 3 cut(s) 276, 459, 601
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 4 cut(s) 11, 41, 433, 553
BstV1I GCAGC 2 cut(s) 19, 274
BstV2I GAAGAC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 145, 262
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 429
CaiI CAGNNNCTG 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 143, 508
CseI GACGC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 352, 385, 401, 476
CviAII CATG 1 cut(s) 79
CviQI GTAC 4 cut(s) 352, 385, 401, 476
DdeI CTNAG 1 cut(s) 450
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 3 cut(s) 221, 294, 642
EcoO109I RGGNCCY 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 82
FaiI YATR 4 cut(s) 74, 80, 104, 464
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 33, 288
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 33, 288
FspBI CTAG 2 cut(s) 557, 566
GluI GCNGC 2 cut(s) 33, 288
GsaI CCCAGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 145, 262
HgaI GACGC 1 cut(s) 293
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 2 cut(s) 300, 490
HindII GTYRAC 2 cut(s) 300, 490
HinfI GANTC 3 cut(s) 227, 314, 452
Hpy166II GTNNAC 3 cut(s) 300, 385, 490
Hpy188I TCNGA 5 cut(s) 93, 170, 313, 451, 622
Hpy188III TCNNGA 6 cut(s) 194, 209, 224, 458, 518, 566
Hpy8I GTNNAC 3 cut(s) 300, 385, 490
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 5 cut(s) 82, 139, 338, 580, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 41, 433, 553
HpyF3I CTNAG 1 cut(s) 450
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 3 cut(s) 106, 409, 433
LpnPI CCDG 9 cut(s) 24, 82, 167, 179, 263, 340, 354, 557, 612
Lsp1109I GCAGC 2 cut(s) 19, 274
LweI GCATC 2 cut(s) 543, 585
MaeI CTAG 2 cut(s) 557, 566
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MboII GAAGA 3 cut(s) 133, 136, 227
MfeI CAATTG 1 cut(s) 39
MluCI AATT 6 cut(s) 19, 39, 48, 266, 273, 570
MlyI GAGTC 2 cut(s) 221, 461
MnlI CCTC 3 cut(s) 334, 411, 499
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 14
MunI CAATTG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 11, 41, 433, 553
NdeII GATC 1 cut(s) 520
NlaIII CATG 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 590
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 34, 289
PleI GAGTC 2 cut(s) 221, 460
PpsI GAGTC 2 cut(s) 221, 460
PspFI CCCAGC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 143, 508
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 353, 386, 402, 477
RsaNI GTAC 4 cut(s) 352, 385, 401, 476
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 33, 288
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 2 cut(s) 143, 508
SchI GAGTC 2 cut(s) 221, 461
SfaNI GCATC 2 cut(s) 543, 585
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse9I AATT 6 cut(s) 19, 39, 48, 266, 273, 570
SsiI CCGC 1 cut(s) 431
SspMI CTAG 2 cut(s) 557, 566
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 119, 459
TaqII GACCGA 1 cut(s) 285
TasI AATT 6 cut(s) 19, 39, 48, 266, 273, 570
TatI WGTACW 3 cut(s) 351, 384, 400
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 2 cut(s) 32, 287
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 565
XspI CTAG 2 cut(s) 557, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.