RchiOBHm_Chr3g0477131
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
22955305 .. 22956473
1169 bp
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UTR
Exon/CDS
Intron
PRQ44246

Sequence Viewer

Length: 408 bp
ATGGCTTCAGAATCTGCTTCCTCCTGTTACAATGCACCAGAAACCAAGTACAGTAAGAAAGCAACTGAACAGATGGATGTGTACAGCTTTGGTGTGGTACTATTGGAGCTAGTGAGGGGTCGGCAAGCGGAGCAAGCATTACAATCTGAGTCTCTCGATATAGTGAAGTGGGTACGACGAAAGGTCAACATTACAAATGGAGCGGTCCAAGTTCTTCATCCCAAGATAACAAGTTCAGCCCAGCAAGAGATGCTAATAGCTCTAGAAATTACTCTGCATTGCACTTCTGTGATGCCGGAAAAGAGACCATCAATGTCTGAAGTTGTGAAATCACTTCAGTCCCTCGACTCGATGACTCACACTGCTGTTGTAGACTTTTCTGCCTTTGAGGAGCATTCGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

135

Amino Acids

14.97

Weight (kDa)

5.78

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 110 1.9e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 112 5.3e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 372
AciI CCGC 2 cut(s) 128, 203
AcuI CTGAAG 2 cut(s) 320, 339
AfaI GTAC 4 cut(s) 50, 83, 99, 174
AhdI GACNNNNNGTC 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 3 cut(s) 87, 109, 260
AluI AGCT 3 cut(s) 87, 109, 260
Alw26I GTCTC 2 cut(s) 156, 298
AlwNI CAGNNNCTG 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 205
BccI CCATC 2 cut(s) 67, 316
BcoDI GTCTC 2 cut(s) 156, 298
BfaI CTAG 2 cut(s) 110, 263
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 205
BmsI GCATC 2 cut(s) 240, 282
BsaI GGTCTC 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 277
BseGI GGATG 2 cut(s) 82, 217
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 156, 298
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 81
BspACI CCGC 2 cut(s) 128, 203
BspCNI CTCAG 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 126, 135
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 82, 217
BstMAI GTCTC 2 cut(s) 156, 298
BstMWI GCNNNNNNNGC 3 cut(s) 130, 134, 250
BtsCI GGATG 2 cut(s) 82, 217
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 126, 135
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 4 cut(s) 49, 82, 98, 173
CviJI RGCY 5 cut(s) 5, 87, 109, 239, 260
CviKI_1 RGCY 5 cut(s) 5, 87, 109, 239, 260
CviQI GTAC 4 cut(s) 49, 82, 98, 173
DdeI CTNAG 1 cut(s) 147
DriI GACNNNNNGTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 320, 339
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 325
FblI GTMKAC 1 cut(s) 372
FokI GGATG 2 cut(s) 89, 204
FspBI CTAG 2 cut(s) 110, 263
GsaI CCCAGC 1 cut(s) 244
HapII CCGG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 4 cut(s) 11, 149, 347, 355
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 82, 187, 373
Hpy188I TCNGA 4 cut(s) 10, 148, 319, 407
Hpy188III TCNNGA 2 cut(s) 155, 263
Hpy8I GTNNAC 3 cut(s) 82, 187, 373
Hpy99I CGWCG 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 35, 277, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 134, 250
HpyF3I CTNAG 1 cut(s) 147
LmnI GCTCC 4 cut(s) 106, 130, 200, 391
LpnPI CCDG 4 cut(s) 37, 51, 254, 309
LweI GCATC 2 cut(s) 240, 282
MaeI CTAG 2 cut(s) 110, 263
MaeIII GTNAC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 203
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 267
MlyI GAGTC 3 cut(s) 158, 341, 349
MnlI CCTC 4 cut(s) 31, 108, 353, 382
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 3 cut(s) 130, 134, 250
OliI CACNNNNGTG 1 cut(s) 287
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 3 cut(s) 157, 341, 349
PpsI GAGTC 3 cut(s) 157, 341, 349
PspFI CCCAGC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 50, 83, 99, 174
RsaNI GTAC 4 cut(s) 49, 82, 98, 173
RseI CAYNNNNRTG 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 3 cut(s) 158, 341, 349
SetI ASST 4 cut(s) 89, 111, 186, 262
SfaNI GCATC 2 cut(s) 240, 282
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 128, 203
SspMI CTAG 2 cut(s) 110, 263
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 156, 345, 350
TasI AATT 1 cut(s) 267
TatI WGTACW 2 cut(s) 48, 81
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 110, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.