Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006756

Physical Location & Seq

Genomic Coordinates Forward (+)

21425143 .. 21427078

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTTTTGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTATTGCTTGGCCATTATGTGTAAGCTGTATCAAACCAATGCTGGATTCACTGATGATCTGATAAGTTCAGAGAAGTCTATGGCACAACCAGCTGAAAATTTTGATACTGCTGCTACAATTGCTTTAATTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGTCTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTTTGCTGGAGATAGTTCTGGACGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGCTTTCAACACGAATAAAATGGCCTAAATTAGCAATTCTGGGAGATGCTGCCTTTCGGTCAACAATGGCTTCAGAATCTGCTTCCTCCTGTTACAATGCACCAGAAACCAAGTACAGTAAGAAAGCAACTGAACAGATGGATGTGTACAGCTTTGGTGTTGTACTATTGGAGCTATTGAGGGGTCGGCAAGCGGAGCAAGTCTTACAATCTGAGTCTCTCGATATAGTGAAGTGGGTACAACGAAAGGTCAACATTACAAATGGAGAGGTCCAAGTTCTTGATCCCAAGATAACAAGTTCAGCCCAGCAAGAGATGCTAGTAGCTCTAGAAATTACTCTGCATTGCACTTCTGTGATGCCGGAAAAGAGACCATCAATGTCTGAAGCTGTGAAATCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.5

Weight (kDa)

5.66

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	143 - 253	2.7e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	147 - 255	7.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06940
fragaria_vesca	FvH4_6g23050
malus_domestica	MD12G1065000.v1.1 MD14G1065000.v1.1
prunus_persica	Prupe.7G069000_v2.0.a1
pyrus_communis	pycom12g05680 pycom14g05290
rosa_chinensis	RchiOBHm_Chr3g0477021 RchiOBHm_Chr3g0477131 RchiOBHm_Chr3g0480901
rosa_laevigata	RLG00000023443
rosa_multiflora	Rmu_co8505247.1_g000001 Rmu_sc0002812.1_g000001 Rmu_sc0023367.1_g000004
rosa_roxburghii	Rroxscaffold_6G00400900
rosa_rugosa	Rorug03G0187400
rosa_samantha	Rh3AG208400 Rh3AG238700 Rh3BG241400 Rh3BG242200 Rh3BG272900 Rh3CG268400 Rh3DG234600 Rh3DG264500
rosa_wichuraiana	Rw3G019010 Rw3G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	272
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	3 cut(s)	347, 420, 768
AfaI	GTAC	4 cut(s)	479, 512, 528, 603
AgsI	TTSAA	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	9 cut(s)	73, 140, 235, 328, 367, 516, 538, 689, 752
AluI	AGCT	9 cut(s)	73, 140, 235, 328, 367, 516, 538, 689, 752
Alw26I	GTCTC	2 cut(s)	585, 727
AlwI	GGATC	1 cut(s)	641
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	57, 386
ApeKI	GCWGC	2 cut(s)	158, 413
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	145, 400
BccI	CCATC	3 cut(s)	281, 496, 745
BcoDI	GTCTC	2 cut(s)	585, 727
BfaI	CTAG	2 cut(s)	683, 692
BisI	GCNGC	2 cut(s)	159, 414
BlsI	GCNGC	2 cut(s)	160, 415
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	634
BmsI	GCATC	3 cut(s)	400, 669, 711
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	706
BseGI	GGATG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	145, 400
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	2 cut(s)	59, 388
BsiSI	CCGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	585, 727
BsnI	GGCC	2 cut(s)	59, 388
Bso31I	GGTCTC	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	103, 646
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	59, 388
BspCNI	CTCAG	1 cut(s)	568
BspPI	GGATC	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	510
BssMI	GATC	2 cut(s)	103, 646
Bst4CI	ACNGT	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	106, 649
BstMAI	GTCTC	2 cut(s)	585, 727
BstMBI	GATC	2 cut(s)	103, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 167, 559, 679
BstV1I	GCAGC	2 cut(s)	145, 400
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	59, 388
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	4 cut(s)	478, 511, 527, 602
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	4 cut(s)	478, 511, 527, 602
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	2 cut(s)	105, 648
DpnII	GATC	2 cut(s)	103, 646
EaeI	YGGCCR	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	3 cut(s)	347, 420, 768
FaeI	CATG	1 cut(s)	208
FaiI	YATR	6 cut(s)	65, 128, 200, 206, 230, 590
FatI	CATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	159, 414
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	159, 414
FspBI	CTAG	2 cut(s)	683, 692
GluI	GCNGC	2 cut(s)	159, 414
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	59, 388
HapII	CCGG	1 cut(s)	725
Hin1II	CATG	1 cut(s)	208
HincII	GTYRAC	2 cut(s)	426, 616
HindII	GTYRAC	2 cut(s)	426, 616
HinfI	GANTC	4 cut(s)	93, 353, 440, 578
HpaII	CCGG	1 cut(s)	725
Hpy166II	GTNNAC	4 cut(s)	273, 426, 511, 616
Hpy188I	TCNGA	7 cut(s)	108, 118, 219, 296, 439, 577, 748
Hpy188III	TCNNGA	6 cut(s)	15, 320, 350, 584, 644, 692
Hpy8I	GTNNAC	4 cut(s)	273, 426, 511, 616
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	5 cut(s)	208, 265, 464, 706, 711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 167, 559, 679
HpyF3I	CTNAG	1 cut(s)	576
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	103, 646
LmnI	GCTCC	3 cut(s)	232, 535, 559
Lsp1109I	GCAGC	2 cut(s)	145, 400
LweI	GCATC	3 cut(s)	400, 669, 711
MaeI	CTAG	2 cut(s)	683, 692
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	105, 648
MboI	GATC	2 cut(s)	103, 646
MboII	GAAGA	3 cut(s)	259, 262, 353
MfeI	CAATTG	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	6 cut(s)	145, 165, 174, 392, 399, 696
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	347, 587
MnlI	CCTC	3 cut(s)	460, 537, 625
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	725
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	137, 167, 559, 679
NdeII	GATC	2 cut(s)	103, 646
NlaIII	CATG	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	716
PfeI	GAWTC	2 cut(s)	93, 440
PkrI	GCNGC	2 cut(s)	160, 415
PleI	GAGTC	2 cut(s)	347, 586
PpsI	GAGTC	2 cut(s)	347, 586
PspFI	CCCAGC	1 cut(s)	669
PspPI	GGNCC	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	479, 512, 528, 603
RsaNI	GTAC	4 cut(s)	478, 511, 527, 602
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	159, 414
Sau3AI	GATC	2 cut(s)	103, 646
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	2 cut(s)	347, 587
SfaNI	GCATC	3 cut(s)	400, 669, 711
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	6 cut(s)	145, 165, 174, 392, 399, 696
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	2 cut(s)	683, 692
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	245, 585
TaqII	GACCGA	1 cut(s)	411
TasI	AATT	6 cut(s)	145, 165, 174, 392, 399, 696
TatI	WGTACW	3 cut(s)	477, 510, 526
TfiI	GAWTC	2 cut(s)	93, 440
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	158, 413
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	2 cut(s)	683, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.