Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023367.1

Orthogroup ID

OG0006756

Physical Location & Seq

Genomic Coordinates Reverse (-)

25655 .. 26647

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023367.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaaatccaagaggaatcaactcttacataaggaagggagtgatcggggaatatcagcagacattgaaagggccgatatctcctgttctgagggaggtggcgagctcctcagcgacagtcaaacaagaggagacccggccgttgagagccaaccagaccatctcggccatccaaagaaaaccaagtacagtaagaaaacaactgaacagatggatgtgtacagctttggtgttgcactattggagcaagtgaggggtcggcaagcggagcaagcattacaatctgagtctctcgatatagtgaagtgggtacgacgaaaggtcaacattacaaatggagaggtccaagttcttgatcccaagataacaagttcagctcagcaagagatgctaatagctctagattctagaaattactctgcattgcacttctttgatgccggaaaagagaccatcaatgttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

155

Amino Acids

17.21

Weight (kDa)

6.09

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06940
fragaria_vesca	FvH4_6g23050
malus_domestica	MD12G1065000.v1.1 MD14G1065000.v1.1
prunus_persica	Prupe.7G069000_v2.0.a1
pyrus_communis	pycom12g05680 pycom14g05290
rosa_chinensis	RchiOBHm_Chr3g0477021 RchiOBHm_Chr3g0477131 RchiOBHm_Chr3g0480901
rosa_laevigata	RLG00000023443
rosa_multiflora	Rmu_co8505247.1_g000001 Rmu_sc0002812.1_g000001 Rmu_sc0023367.1_g000004
rosa_roxburghii	Rroxscaffold_6G00400900
rosa_rugosa	Rorug03G0187400
rosa_samantha	Rh3AG208400 Rh3AG238700 Rh3BG241400 Rh3BG242200 Rh3BG272900 Rh3CG268400 Rh3DG234600 Rh3DG264500
rosa_wichuraiana	Rw3G019010 Rw3G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	138, 166
AfaI	GTAC	3 cut(s)	188, 221, 312
AgsI	TTSAA	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	320
AluBI	AGCT	4 cut(s)	106, 225, 377, 398
AluI	AGCT	4 cut(s)	106, 225, 377, 398
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	126, 294, 443
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	3 cut(s)	72, 138, 166
AspS9I	GGNCC	2 cut(s)	72, 343
AsuC2I	CCSGG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	110
BccI	CCATC	4 cut(s)	168, 177, 205, 461
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	126, 294, 443
BfaI	CTAG	2 cut(s)	401, 408
BlpI	GCTNAGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	343
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	72, 343
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	378, 427
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	2 cut(s)	126, 443
Bse3DI	GCAATG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	169, 220
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	4 cut(s)	81, 124, 276, 392
BseRI	GAGGAG	2 cut(s)	98, 144
BseX3I	CGGCCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	74, 140, 168
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	137, 441
BsmAI	GTCTC	3 cut(s)	126, 294, 443
BsnI	GGCC	3 cut(s)	74, 140, 168
Bso31I	GGTCTC	2 cut(s)	126, 443
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	43, 355
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	3 cut(s)	74, 140, 168
BspCNI	CTCAG	4 cut(s)	82, 123, 277, 391
BspPI	GGATC	1 cut(s)	350
BspTNI	GGTCTC	2 cut(s)	126, 443
BsrDI	GCAATG	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	219
BssMI	GATC	2 cut(s)	43, 355
Bst4CI	ACNGT	2 cut(s)	119, 191
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	104, 264, 273
BstDEI	CTNAG	4 cut(s)	90, 110, 285, 378
BstF5I	GGATG	2 cut(s)	169, 220
BstKTI	GATC	2 cut(s)	46, 358
BstMAI	GTCTC	3 cut(s)	126, 294, 443
BstMBI	GATC	2 cut(s)	43, 355
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 272, 388
BstSCI	CCNGG	1 cut(s)	135
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	74, 140, 168
BtsCI	GGATG	2 cut(s)	169, 220
Cac8I	GCNNGC	3 cut(s)	104, 264, 273
Cfr13I	GGNCC	2 cut(s)	72, 343
Csp6I	GTAC	3 cut(s)	187, 220, 311
CviJI	RGCY	8 cut(s)	74, 106, 140, 150, 168, 225, 377, 398
CviKI_1	RGCY	8 cut(s)	74, 106, 140, 150, 168, 225, 377, 398
CviQI	GTAC	3 cut(s)	187, 220, 311
DdeI	CTNAG	4 cut(s)	90, 110, 285, 378
DpnI	GATC	2 cut(s)	45, 357
DpnII	GATC	2 cut(s)	43, 355
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	138, 166
EagI	CGGCCG	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	2 cut(s)	126, 443
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	343
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	2 cut(s)	30, 299
FokI	GGATG	2 cut(s)	156, 227
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	401, 408
HaeIII	GGCC	3 cut(s)	74, 140, 168
HapII	CCGG	2 cut(s)	137, 441
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	16, 287, 404
HpaII	CCGG	2 cut(s)	137, 441
Hpy166II	GTNNAC	2 cut(s)	220, 325
Hpy188I	TCNGA	3 cut(s)	91, 286, 467
Hpy188III	TCNNGA	4 cut(s)	293, 353, 401, 408
Hpy8I	GTNNAC	2 cut(s)	220, 325
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	119, 191
HpyCH4V	TGCA	3 cut(s)	236, 422, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 272, 388
HpyF3I	CTNAG	4 cut(s)	90, 110, 285, 378
Kzo9I	GATC	2 cut(s)	43, 355
LmnI	GCTCC	3 cut(s)	111, 244, 268
LpnPI	CCDG	4 cut(s)	97, 150, 168, 454
LweI	GCATC	2 cut(s)	378, 427
MaeI	CTAG	2 cut(s)	401, 408
MalI	GATC	2 cut(s)	45, 357
MboI	GATC	2 cut(s)	43, 355
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	7 cut(s)	6, 85, 89, 119, 122, 246, 334
MspI	CCGG	2 cut(s)	137, 441
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	268, 272, 388
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	43, 355
NmeAIII	GCCGAG	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	16, 404
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	72, 343
RsaI	GTAC	3 cut(s)	188, 221, 312
RsaNI	GTAC	3 cut(s)	187, 220, 311
SacI	GAGCTC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	43, 355
Sau96I	GGNCC	2 cut(s)	72, 343
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	100, 108, 227, 324, 345, 379, 400
SfaNI	GCATC	2 cut(s)	378, 427
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	401, 408
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	119, 191
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	412
TatI	WGTACW	2 cut(s)	186, 219
TfiI	GAWTC	2 cut(s)	16, 404
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	343
XbaI	TCTAGA	2 cut(s)	400, 407
XspI	CTAG	2 cut(s)	401, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.