RchiOBHm_Chr3g0487041

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
34174990 .. 34175716
727 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45148

Sequence Viewer

Length: 273 bp
ATGACCAGCAGGATACCTGAACTTGATGCTCTCCTGTCGTCGGGTTGTAGTCTCCAGGGGGCAGTGAAGATTCTAGAGGGCGGGATAAACATTTGTTTGAAATTTGAATCTCCCGAAGCTCACGAAGATAAGCTGTTGATCGGAGACTTCGTCTTTGACCTTGAGATTGAACTTGGACGCCCTCTGCCACTTTGTTCTTATCACAATTTGAATGCTTTCTTCTGTTTCTTTTTTTTCGTAGCTTATCCCCGCCCAAGCTTGGTCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

4.74

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 250
AcsI RAATTY 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 40, 259
AgsI TTSAA 4 cut(s) 100, 107, 170, 211
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 4 cut(s) 119, 133, 242, 258
AluI AGCT 4 cut(s) 119, 133, 242, 258
Alw26I GTCTC 2 cut(s) 56, 138
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
Asp700I GAANNNNTTC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 56
BciVI GTATCC 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 56, 138
BfaI CTAG 1 cut(s) 74
BfuI GTATCC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 259
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 40, 259
BslI CCNNNNNNNGG 2 cut(s) 40, 259
BsmAI GTCTC 2 cut(s) 56, 138
BsmI GAATGC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 2 cut(s) 81, 250
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 178
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 56, 138
BstMBI GATC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CseI GACGC 1 cut(s) 186
CviJI RGCY 4 cut(s) 119, 133, 242, 258
CviKI_1 RGCY 4 cut(s) 119, 133, 242, 258
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 54
FauI CCCGC 2 cut(s) 74, 257
FspBI CTAG 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 38
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 2 cut(s) 70, 107
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 74, 113, 122
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 19, 30, 41, 47, 68
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 74
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 79, 137, 211
MluCI AATT 2 cut(s) 101, 205
MnlI CCTC 2 cut(s) 70, 192
MroXI GAANNNNTTC 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 56
NdeII GATC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 70, 107
PflFI GACNNNGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 56
SetI ASST 7 cut(s) 19, 121, 135, 162, 244, 260, 270
SfaNI GCATC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 101, 205
SsiI CCGC 2 cut(s) 81, 250
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 54
TasI AATT 2 cut(s) 101, 205
TfiI GAWTC 2 cut(s) 70, 107
TscAI CASTG 1 cut(s) 69
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 149
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.