RchiOBHm_Chr5g0033411

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
27234935 .. 27237729
2795 bp
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UTR
Exon/CDS
Intron
PRQ31250

Sequence Viewer

Length: 294 bp
ATGATTTTTCGCCTCCAGGGGGCAGTGAAGATTCTAGAGGGCTGGATAAACATTTGTTTGAAATTTGAATCTCCCGAAGCTCACGAAGATAAGCCGTTGATCGGAGACTTCGTCTTTGACTTTGAGATTGAACTTGGACGCCGTCTGCCACCTTGTTCTTATCTCTCTTTGAGATATTTGAATCACAATTTGAATGCTTTCTTCTGTTTCTGTTTTTTTCGCAGCTTATCCCCGCTCAAGCTTGGTCAAGCTTGGTCAACCATTCAAACTTGTTTGAATTTGAGAAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.39

Weight (kDa)

8.7

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 62, 277
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 19, 101
AgsI TTSAA 7 cut(s) 61, 68, 131, 181, 193, 266, 277
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 4 cut(s) 80, 225, 241, 251
AluI AGCT 4 cut(s) 80, 225, 241, 251
Alw26I GTCTC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 62, 277
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 234
BceAI ACGGC 2 cut(s) 79, 126
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 101
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 19, 101
BseXI GCAGC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 19, 101
BsmAI GTCTC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 139
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
CseI GACGC 1 cut(s) 147
CviJI RGCY 6 cut(s) 42, 80, 94, 225, 241, 251
CviKI_1 RGCY 6 cut(s) 42, 80, 94, 225, 241, 251
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 15
FauI CCCGC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 223
HgaI GACGC 1 cut(s) 147
Hin1I GRCGYC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 2 cut(s) 239, 249
HinfI GANTC 3 cut(s) 31, 68, 181
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 35, 74, 83
Hpy8I GTNNAC 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 2, 28, 29
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 1 cut(s) 35
MalI GATC 1 cut(s) 101
MbiI CCGCTC 1 cut(s) 235
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 40, 98, 193
MluCI AATT 3 cut(s) 62, 187, 277
MnlI CCTC 2 cut(s) 23, 31
MroXI GAANNNNTTC 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 1 cut(s) 17
NdeII GATC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 31, 68, 181
PflFI GACNNNGTC 2 cut(s) 110, 141
PkrI GCNGC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PsyI GACNNNGTC 2 cut(s) 110, 141
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 82, 154, 227, 243, 253
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 62, 187, 277
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 15
TasI AATT 3 cut(s) 62, 187, 277
TfiI GAWTC 3 cut(s) 31, 68, 181
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 222
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 2 cut(s) 110, 141
XapI RAATTY 2 cut(s) 62, 277
XbaI TCTAGA 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.