RchiOBHm_Chr7g0197071

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
15005893 .. 15008380
2488 bp
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UTR
Exon/CDS
Intron
PRQ17629

Sequence Viewer

Length: 159 bp
ATGAAGACTCTAGAGGGCTGGATAAGCCTTCATTTGAAATTCAAATTTCGCGAAACTCACGAAGATAAGCTGACCAGAGACCTCATCTTTGACACCGAGATTGAACTCGGACGCACTCTGCTACTTCATTCTTATCTCAAATTGAGATATTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.35

Weight (kDa)

8.12

Isoelectric Point (pI)

22.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AcsI RAATTY 2 cut(s) 38, 44
AgsI TTSAA 3 cut(s) 37, 43, 104
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 38, 44
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 72
Bsp68I TCGCGA 1 cut(s) 51
BspFNI CGCG 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 72
BstFNI CGCG 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstUI CGCG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
CseI GACGC 1 cut(s) 120
CviJI RGCY 3 cut(s) 18, 27, 70
CviKI_1 RGCY 3 cut(s) 18, 27, 70
Eco31I GGTCTC 1 cut(s) 72
FspBI CTAG 1 cut(s) 11
FspEI CC 6 cut(s) 4, 41, 88, 93, 95, 109
HgaI GACGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 11, 50, 59
HpyAV CCTTC 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 4, 88
MaeI CTAG 1 cut(s) 11
MboII GAAGA 2 cut(s) 16, 74
MluCI AATT 3 cut(s) 38, 44, 140
MnlI CCTC 2 cut(s) 7, 92
MseI TTAA 1 cut(s) 157
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 24
NruI TCGCGA 1 cut(s) 51
RruI TCGCGA 1 cut(s) 51
SaqAI TTAA 1 cut(s) 157
SetI ASST 2 cut(s) 72, 84
SgeI CNNG 7 cut(s) 23, 31, 62, 71, 87, 109, 119
Sse9I AATT 3 cut(s) 38, 44, 140
SspMI CTAG 1 cut(s) 11
TasI AATT 3 cut(s) 38, 44, 140
Tru1I TTAA 1 cut(s) 157
Tru9I TTAA 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 17, 20, 116
XapI RAATTY 2 cut(s) 38, 44
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.