RchiOBHm_Chr7g0219601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
38161747 .. 38162132
386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19654

Sequence Viewer

Length: 270 bp
ATGATACCTGAATATGAAGCTCTCCTGTTGTCAATTTGTTGTCTCCAGCTTTGTGTTCTTTATATAGGAGGCAGCGAAGGCTCTAGAGGCTGGATAAACGCTCGTTTGAAATTTGAAATTCCCGAGGCTCACGTGGATAAGCTGCTGAACAGAGATTTCCTCCTTAACTCCGATATTGAACTTAGACACCCCCTGCCACTTTTTTCTTATCTCACTTTGAGATATTTGAATCACAATTTGAATGCTTTCTTTTGTTTTCTGTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.39

Weight (kDa)

5.82

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 110, 117
AcvI CACGTG 1 cut(s) 133
AgsI TTSAA 5 cut(s) 109, 116, 179, 229, 241
AluBI AGCT 3 cut(s) 20, 49, 142
AluI AGCT 3 cut(s) 20, 49, 142
Alw26I GTCTC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 72, 142
ApoI RAATTY 2 cut(s) 110, 117
Asp700I GAANNNNTTC 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 133
BbvI GCAGC 2 cut(s) 84, 129
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 73, 143
BlsI GCNGC 2 cut(s) 74, 144
BmeT110I CYCGRG 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 84, 129
BsiHKCI CYCGRG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 78, 87
BstV1I GCAGC 2 cut(s) 84, 129
CviJI RGCY 6 cut(s) 20, 49, 81, 90, 128, 142
CviKI_1 RGCY 6 cut(s) 20, 49, 81, 90, 128, 142
DdeI CTNAG 1 cut(s) 182
Eco72I CACGTG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 122
FaiI YATR 3 cut(s) 15, 63, 65
Fnu4HI GCNGC 2 cut(s) 73, 143
Fsp4HI GCNGC 2 cut(s) 73, 143
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 73, 143
GsuI CTGGAG 1 cut(s) 29
HinfI GANTC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 84, 122
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 87
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 132
LpnPI CCDG 5 cut(s) 21, 38, 59, 76, 206
Lsp1109I GCAGC 2 cut(s) 84, 129
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 132
MluCI AATT 4 cut(s) 33, 110, 117, 235
MnlI CCTC 4 cut(s) 62, 80, 118, 170
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 78, 87
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 74, 144
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 133
PspCI CACGTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 73, 143
SetI ASST 5 cut(s) 10, 22, 51, 135, 144
Sse9I AATT 4 cut(s) 33, 110, 117, 235
SspMI CTAG 1 cut(s) 84
TaiI ACGT 1 cut(s) 135
TasI AATT 4 cut(s) 33, 110, 117, 235
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 2 cut(s) 72, 142
TspDTI ATGAA 1 cut(s) 30
XapI RAATTY 2 cut(s) 110, 117
XbaI TCTAGA 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.