RchiOBHm_Chr5g0060131

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
65274770 .. 65277389
2620 bp
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UTR
Exon/CDS
Intron
PRQ33665

Sequence Viewer

Length: 393 bp
ATGTTTTCTGAGTTTTGGGGTTTTGTGGCTTTTTGGTTGGTGTATTTGGCTTTGGGGATTTCGAGGCTTTTTAGCACGGAGGATTTGTTATCGGTGCTGTTTTGGAAGGGTTATAAAACCCATGTGGAAATAAACAGAGGAAGAACTTTCTGCACTCATGAACCCATCAGCAACAATACAGGAAAAGTACCAATAAAAGACCATGGAGAAATGACCAGCAGGATACCTGAACTTGATGCTCTCCTGTCGTCGGGTTGTAGTCTCCAGGTAACTAAGCACTGTGCACTATTTCTTTCTCTTGAATGCAGCCTCACTCTGATGCACCAATATAACTCACCCTTCTCTCTATTTCTCTCCGTCCCTTTCTTATGCAGCCTTGTGTTTCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

6.49

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 306, 372
AsuHPI GGTGA 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 318, 384
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 266
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 2 cut(s) 307, 373
BlsI GCNGC 2 cut(s) 308, 374
Bme1390I CCNGG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 226, 309
BpmI CTGGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 318, 384
BsgI GTGCAG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 286
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 9, 273
BstDSI CCRYGG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 318, 384
BsuI GTATCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 157
Csp6I GTAC 1 cut(s) 188
CviAII CATG 3 cut(s) 122, 158, 203
CviJI RGCY 5 cut(s) 29, 50, 67, 309, 375
CviKI_1 RGCY 5 cut(s) 29, 50, 67, 309, 375
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 9, 273
Eco130I CCWWGG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 125, 161, 206
FaiI YATR 8 cut(s) 114, 123, 159, 204, 330, 370, 389, 391
FaqI GGGAC 1 cut(s) 344
FatI CATG 3 cut(s) 121, 157, 202
Fnu4HI GCNGC 2 cut(s) 307, 373
Fsp4HI GCNGC 2 cut(s) 307, 373
GluI GCNGC 2 cut(s) 307, 373
GsuI CTGGAG 1 cut(s) 248
Hin1II CATG 3 cut(s) 125, 161, 206
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 10, 318
Hpy188III TCNNGA 2 cut(s) 158, 299
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 100, 349
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 153, 284, 306, 322, 372
HpyF3I CTNAG 2 cut(s) 9, 273
Hsp92II CATG 3 cut(s) 125, 161, 206
LpnPI CCDG 7 cut(s) 165, 205, 229, 240, 251, 257, 278
Lsp1109I GCAGC 2 cut(s) 318, 384
LweI GCATC 2 cut(s) 226, 309
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 286
MnlI CCTC 4 cut(s) 57, 73, 131, 320
MslI CAYNNNNRTG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 202
NlaIII CATG 3 cut(s) 125, 161, 206
PagI TCATGA 1 cut(s) 157
PctI GAATGC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 308, 374
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 317
SatI GCNGC 2 cut(s) 307, 373
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 286
SetI ASST 2 cut(s) 229, 270
SfaNI GCATC 2 cut(s) 226, 309
SmiMI CAYNNNNRTG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 62
TscAI CASTG 1 cut(s) 284
TseI GCWGC 2 cut(s) 306, 372
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 2 cut(s) 92, 346
TspRI CASTG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.