Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000566.1

Orthogroup ID

OG0017413

Physical Location & Seq

Genomic Coordinates Reverse (-)

141611 .. 145387

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000566.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggatgggtatgcgaagaagcttattgaggctattaaggttatggatgagatggaggataatggggttggcgccaatgaggttacttatggggttatgattgaagcttattgtaaggaaaagaagtcggcgaagcggttaatgtgcttaatgatatggtggagaagaggattctgtaagattagaaaagcgaagaagggaattaggattttggatgagatgttcgaaaaaggctgtttgccaaacaagtctacttatgctatgttgattgaggggctctgtgactcgggagaggaagctgaaatcactagagtaatatctatggcaatgtcaagtgggatcttttacttactaagtcttgtggctggaggtaggcacccttctgtgaagagacgtccactttactttcaggggcaccattctgatgacgacttcgctacaggtgaagtaacttcttacatctggcgctgcacaaagatccctccggagcagtttctttgctttgacgcaccgcgatacaggcatcaaaacaagtgcagtgaaacccccttgagttggaccttgcttccgccacctacacacaggacgcaccgcatatggagggatttgttttcggagctgttcaagaacggttatggagcccacatggaaatgggcagaggcaagtctttctgcactcatggagatattagcaacgatgaaggaatagtagcaaggaagatcatgaaggaacgaccagcaggatacctgaatatgaagctctcctgtcgtcgggttgtcgtctccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

263

Amino Acids

30.19

Weight (kDa)

9.17

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017413)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361431 RchiOBHm_Chr3g0487041 RchiOBHm_Chr3g0495601 RchiOBHm_Chr5g0009731 RchiOBHm_Chr5g0033411 RchiOBHm_Chr5g0047401 RchiOBHm_Chr5g0060131 RchiOBHm_Chr7g0197071 RchiOBHm_Chr7g0197081 RchiOBHm_Chr7g0219601
rosa_multiflora	Rmu_sc0000566.1_g000030
rosa_roxburghii	Rroxscaffold_7G00202750
rosa_samantha	Rh5CG485800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	397
AccB1I	GGYRCC	3 cut(s)	71, 375, 414
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	4 cut(s)	136, 512, 569, 592
AclWI	GGATC	2 cut(s)	347, 472
AcyI	GRCGYC	2 cut(s)	72, 394
AfiI	CCNNNNNNNGG	2 cut(s)	555, 771
AgsI	TTSAA	2 cut(s)	104, 625
AjnI	CCWGG	1 cut(s)	785
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	5 cut(s)	22, 107, 299, 619, 760
AluI	AGCT	5 cut(s)	22, 107, 299, 619, 760
Alw26I	GTCTC	2 cut(s)	385, 787
AlwI	GGATC	2 cut(s)	347, 472
Ama87I	CYCGRG	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	74, 468
AspS9I	GGNCC	1 cut(s)	558
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	225
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	3 cut(s)	71, 375, 414
BanII	GRGCYC	2 cut(s)	279, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	787
BciVI	GTATCC	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	385, 787
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	2 cut(s)	75, 469
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	787
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	4 cut(s)	73, 377, 416, 640
BmrFI	CCNGG	1 cut(s)	787
BmsI	GCATC	1 cut(s)	532
BpmI	CTGGAG	2 cut(s)	387, 769
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	571
BsaHI	GRCGYC	2 cut(s)	72, 394
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 771
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	787
BseGI	GGATG	3 cut(s)	10, 52, 220
BseLI	CCNNNNNNNGG	2 cut(s)	555, 771
BseMI	GCAATG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	3 cut(s)	454, 556, 658
Bsh1236I	CGCG	1 cut(s)	514
BshNI	GGYRCC	3 cut(s)	71, 375, 414
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	555, 771
BsmAI	GTCTC	2 cut(s)	385, 787
BsmBI	CGTCTC	2 cut(s)	385, 787
BsoBI	CYCGRG	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	279, 417, 643
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	339, 477, 720
BspACI	CCGC	4 cut(s)	136, 512, 569, 592
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	4 cut(s)	73, 377, 416, 640
BspPI	GGATC	2 cut(s)	347, 472
BspT104I	TTCGAA	1 cut(s)	225
BspT107I	GGYRCC	3 cut(s)	71, 375, 414
BsrDI	GCAATG	1 cut(s)	333
BssMI	GATC	3 cut(s)	339, 477, 720
BssNI	GRCGYC	2 cut(s)	72, 394
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	2 cut(s)	160, 383
BstACI	GRCGYC	2 cut(s)	72, 394
BstBI	TTCGAA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	10, 52, 220
BstFNI	CGCG	1 cut(s)	514
BstH2I	RGCGCY	2 cut(s)	75, 469
BstHHI	GCGC	2 cut(s)	74, 468
BstKTI	GATC	3 cut(s)	342, 480, 723
BstMAI	GTCTC	2 cut(s)	385, 787
BstMBI	GATC	3 cut(s)	339, 477, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNI	CCWGG	1 cut(s)	787
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	339, 477
BstYI	RGATCY	2 cut(s)	339, 477
BsuI	GTATCC	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	10, 52, 220
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	2 cut(s)	74, 468
Cfr13I	GGNCC	1 cut(s)	558
CseI	GACGC	2 cut(s)	515, 595
CviAII	CATG	3 cut(s)	646, 680, 724
DdeI	CTNAG	1 cut(s)	353
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	3 cut(s)	341, 479, 722
DpnII	GATC	3 cut(s)	339, 477, 720
Eam1104I	CTCTTC	2 cut(s)	160, 383
EarI	CTCTTC	2 cut(s)	160, 383
EciI	GGCGGA	1 cut(s)	558
Eco24I	GRGCYC	2 cut(s)	279, 643
Eco47I	GGWCC	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	785
EcoT38I	GRGCYC	2 cut(s)	279, 643
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	385, 787
FaeI	CATG	3 cut(s)	649, 683, 727
FatI	CATG	3 cut(s)	645, 679, 723
FauNDI	CATATG	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	3 cut(s)	17, 59, 227
FriOI	GRGCYC	2 cut(s)	279, 643
Fsp4HI	GCNGC	1 cut(s)	469
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	73, 467
GluI	GCNGC	1 cut(s)	469
GsuI	CTGGAG	2 cut(s)	387, 769
HaeII	RGCGCY	2 cut(s)	75, 469
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	2 cut(s)	515, 595
HhaI	GCGC	2 cut(s)	74, 468
Hin1I	GRCGYC	2 cut(s)	72, 394
Hin1II	CATG	3 cut(s)	649, 683, 727
Hin6I	GCGC	2 cut(s)	72, 466
HinP1I	GCGC	2 cut(s)	72, 466
HindIII	AAGCTT	2 cut(s)	20, 105
HinfI	GANTC	2 cut(s)	171, 284
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	252, 398
Hpy188I	TCNGA	2 cut(s)	424, 616
Hpy188III	TCNNGA	4 cut(s)	288, 485, 625, 724
Hpy8I	GTNNAC	2 cut(s)	252, 398
Hpy99I	CGWCG	1 cut(s)	774
HpyAV	CCTTC	4 cut(s)	190, 390, 695, 721
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	471, 537, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	2 cut(s)	72, 394
Hsp92II	CATG	3 cut(s)	649, 683, 727
HspAI	GCGC	2 cut(s)	72, 466
KasI	GGCGCC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	339, 477, 720
LmnI	GCTCC	3 cut(s)	487, 616, 638
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	82, 281, 448
MalI	GATC	3 cut(s)	341, 479, 722
MboI	GATC	3 cut(s)	339, 477, 720
MboII	GAAGA	5 cut(s)	28, 177, 205, 400, 730
MflI	RGATCY	2 cut(s)	339, 477
MhlI	GDGCHC	3 cut(s)	279, 417, 643
MluCI	AATT	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	536
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	3 cut(s)	36, 140, 149
MslI	CAYNNNNRTG	2 cut(s)	423, 650
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	787
MvaI	CCWGG	1 cut(s)	787
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	520
NarI	GGCGCC	1 cut(s)	72
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	3 cut(s)	339, 477, 720
NlaIII	CATG	3 cut(s)	649, 683, 727
NlaIV	GGNNCC	4 cut(s)	73, 377, 416, 640
NmuCI	GTSAC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	225
PagI	TCATGA	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	278
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	785
PspN4I	GGNNCC	4 cut(s)	73, 377, 416, 640
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	339, 477
RseI	CAYNNNNRTG	2 cut(s)	423, 650
SaqAI	TTAA	3 cut(s)	36, 140, 149
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	3 cut(s)	339, 477, 720
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	3 cut(s)	279, 417, 643
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	423, 650
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	136, 512, 569, 592
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	785
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	36, 140, 149
Tru9I	TTAA	3 cut(s)	36, 140, 149
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	714, 740, 770
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.