RchiOBHm_Chr3g0495601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
45323456 .. 45324481
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45799

Sequence Viewer

Length: 240 bp
ATGCAGCCTTGTGTTCCTTATATAGGGGCAGTGAAGATTCTAGAGGGCTGGATAAACATTTGCTTGAAATTTGAATCTCCCGAAGCTCACGAAGATAAGTTGTTGATCGGAGACTTTGTCTTTGACTTTGAGACTGAACTTGGACACCCTTTGCCACTTTATCCTTATCTCTCTTTGAGATATTTGATTCAAAATTTGAATGCCGCCCTTTTGTTTCTGTTTTGCAGCTTTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.08

Weight (kDa)

4.63

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 204
AcsI RAATTY 2 cut(s) 68, 193
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 67, 74, 191, 199
AluBI AGCT 2 cut(s) 86, 228
AluI AGCT 2 cut(s) 86, 228
Alw26I GTCTC 2 cut(s) 105, 125
ApeKI GCWGC 2 cut(s) 4, 225
ApoI RAATTY 2 cut(s) 68, 193
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
BbvI GCAGC 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 105, 125
BfaI CTAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 5, 204, 226
BlsI GCNGC 3 cut(s) 6, 205, 227
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 105, 125
BsmI GAATGC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 1 cut(s) 204
BssMI GATC 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 21
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 2 cut(s) 105, 125
BstMBI GATC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CviJI RGCY 4 cut(s) 7, 48, 86, 228
CviKI_1 RGCY 4 cut(s) 7, 48, 86, 228
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 21
FaiI YATR 2 cut(s) 21, 23
Fnu4HI GCNGC 3 cut(s) 5, 204, 226
Fsp4HI GCNGC 3 cut(s) 5, 204, 226
FspBI CTAG 1 cut(s) 41
GluI GCNGC 3 cut(s) 5, 204, 226
HinfI GANTC 3 cut(s) 37, 74, 187
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 41, 80, 89
HpyCH4V TGCA 2 cut(s) 4, 225
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 41
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 46, 104
MluCI AATT 2 cut(s) 68, 193
MnlI CCTC 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 205
NdeII GATC 1 cut(s) 105
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 37, 74, 187
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 6, 205, 227
PsyI GACNNNGTC 1 cut(s) 116
SatI GCNGC 3 cut(s) 5, 204, 226
Sau3AI GATC 1 cut(s) 105
SetI ASST 2 cut(s) 88, 230
SgeI CNNG 7 cut(s) 21, 53, 61, 76, 92, 101, 152
Sse9I AATT 2 cut(s) 68, 193
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 41
TasI AATT 2 cut(s) 68, 193
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 3 cut(s) 37, 74, 187
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 4, 225
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 21
XapI RAATTY 2 cut(s) 68, 193
XbaI TCTAGA 1 cut(s) 40
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.