Rroxscaffold_7G00202750

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
51013116 .. 51015995
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202750.1

Sequence Viewer

Length: 318 bp
ATGTTTTCTGGTTGTAGTTTTTGTTCTTCTGATTTCTGGTGGGTAGCAGTAGAGTTTTTGGGGTTTTGTGGCTTTGCTGTTGATGTATTACGCTTTGGGGGAATTTTGAGGCTCTTGGTATGGAGAGATTTGTTTTCAGAGCTGTTTAAGGAGGATTATAGAGCCCACATGGAAATAGGCAGAGGCAAGTGTTTCTGCACTCATGGGAATATTAGCAATGATAACGGAAAAACAGTAAGGAAGGCCATGAAGAAACGACCAGCAGGATACCTGAATATGAAGCTCTCCCGCGTCAAGTTGTCGTCTCCAGTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

9.46

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 102
AluBI AGCT 2 cut(s) 142, 283
AluI AGCT 2 cut(s) 142, 283
Alw26I GTCTC 1 cut(s) 309
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 102
BanII GRGCYC 1 cut(s) 166
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsnI GGCC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 166
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 245
BspFNI CGCG 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 235
BstFNI CGCG 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 309
BstUI CGCG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 245
CseI GACGC 1 cut(s) 280
CviAII CATG 3 cut(s) 169, 203, 247
CviJI RGCY 6 cut(s) 72, 112, 142, 164, 245, 283
CviKI_1 RGCY 6 cut(s) 72, 112, 142, 164, 245, 283
Eco24I GRGCYC 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 3 cut(s) 172, 206, 250
FaiI YATR 6 cut(s) 121, 159, 170, 204, 248, 278
FatI CATG 3 cut(s) 168, 202, 246
FauI CCCGC 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 166
FspBI CTAG 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 280
Hin1II CATG 3 cut(s) 172, 206, 250
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HpaI GTTAAC 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 31, 139
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 198
Hsp92II CATG 3 cut(s) 172, 206, 250
KspAI GTTAAC 1 cut(s) 313
LpnPI CCDG 4 cut(s) 22, 249, 273, 284
MaeI CTAG 1 cut(s) 316
MboII GAAGA 2 cut(s) 18, 262
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 102
MnlI CCTC 3 cut(s) 102, 145, 176
MseI TTAA 2 cut(s) 147, 312
MvnI CGCG 1 cut(s) 291
NlaIII CATG 3 cut(s) 172, 206, 250
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
SaqAI TTAA 2 cut(s) 147, 312
SduI GDGCHC 1 cut(s) 166
SetI ASST 3 cut(s) 144, 273, 285
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 289
SspI AATATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 235
TasI AATT 1 cut(s) 102
Tru1I TTAA 2 cut(s) 147, 312
Tru9I TTAA 2 cut(s) 147, 312
TspDTI ATGAA 2 cut(s) 263, 293
TspGWI ACGGA 1 cut(s) 240
XapI RAATTY 1 cut(s) 102
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.