RchiOBHm_Chr5g0047401

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
43799471 .. 43801989
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32531

Sequence Viewer

Length: 312 bp
ATGACCAGCAGGATACCTGAACTTGATGCTCTCCTGTCGTCGGGTTGTAGTCTCCAGGGGGCAGTGGAGATTCTAGAGGGCGGGATAAACATTTGTTTGAAATTTGAATCTCCCGAAGCTCACGAAGATAAGTTGTTGATCGGAGACTTCGTCTTTGACTTTGAGACTGAACTTGGACGCCCTCTGCCACTTTATCCTCATCTCTCTTTGAGATATTTGATTCAAAATTTGAATGCCGCCCTTTTGTTTCTGTTTTGTAGTATCCACGTTAGAAGTAGGTCAACATTCAACTTCTTGTTTGAATATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.7

Weight (kDa)

4.8

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 237
AcsI RAATTY 2 cut(s) 101, 226
AcyI GRCGYC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 6 cut(s) 100, 107, 224, 232, 289, 302
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 3 cut(s) 56, 138, 158
ApoI RAATTY 2 cut(s) 101, 226
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
BciT130I CCWGG 1 cut(s) 56
BciVI GTATCC 2 cut(s) 6, 272
BcoDI GTCTC 3 cut(s) 56, 138, 158
BfaI CTAG 1 cut(s) 74
BfuI GTATCC 2 cut(s) 6, 272
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 56, 138, 158
BsmI GAATGC 1 cut(s) 238
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 2 cut(s) 81, 237
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 178
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 3 cut(s) 56, 138, 158
BstMBI GATC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BsuI GTATCC 2 cut(s) 6, 272
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CseI GACGC 1 cut(s) 186
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 1 cut(s) 306
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 38
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 3 cut(s) 70, 107, 220
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 74, 113, 122
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 19, 30, 41, 47, 68
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 267
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 137
MluCI AATT 2 cut(s) 101, 226
MnlI CCTC 3 cut(s) 70, 192, 207
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 56
NdeII GATC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 70, 107, 220
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 149
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 56
SetI ASST 4 cut(s) 19, 121, 270, 281
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 2 cut(s) 101, 226
SsiI CCGC 2 cut(s) 81, 237
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 270
TasI AATT 2 cut(s) 101, 226
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 70, 107, 220
TscAI CASTG 1 cut(s) 69
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 149
XapI RAATTY 2 cut(s) 101, 226
XbaI TCTAGA 1 cut(s) 73
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.