RchiOBHm_Chr3g0491991

Belongs to the complex I 75 kDa subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011004
Physical Location & Seq
Reverse (-)
38756172 .. 38761474
5303 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45488

Sequence Viewer

Length: 2232 bp
ATGGGGTTGGGATCGCTTGCTTCCAGGGCCCTAAGGCCCAGGGCCGCAAGGCTCCTCCTCGGCTCCCAGAGAACCATGGTCACATCCACCCCGGAGCTCAAGAATCCGGAGCCGTCCACGGCCGCCCAGCCCGAGCCCCCCGCCGCCGCTGACCTCCCGCCCCGGACCCCGGTCGGTGGGGCCCGAATCCACTTCGCGAACCCGGACGATGCGATCGAGGTGTTCGTGGACGGATACCCTGTGAAAATCCCTAAGGGCATGTCCGTGTTGCAAGCGTGTGAGGTCGCCGGTGTTGACATCCCTAGGTTTTGCTACCACAGCAGATTGTCCATTGCCGGTAATTGCCGCATGTGTCTCGTCGAGGTTGAGAAGTCACCCAAGCCCGTCGCCTCTTGCGCCATGCCTGCTATGCCTGGTATGAAAATTAAGACTGACACTCCAATAGCCAAGAAGGCTCGCGAAGGGGTGATGGAGTTTCTGTTGATGAATCATCCTTTGGATTGTCCAATTTGTGATCAGGGTGGAGAATGTGATCTCCAGGATCAGTCTATGGCATTCGGATCTGATCGTGGCCGATTCACTGAAATGAAGAGATCAGTTGTGGACAAGAATCTTGGTCCTTTGGTCAAGACTGTCATGACTCGCTGTATTCAATGTACACGGTGCGTTAGGTTTGCAACAGAGGTCGCTGGGGTTCAGGACCTTGGAATGTTAGGCCGTGGAAGTGGAGAGGAAATTGGGACTTACGTTGAAAAGCTTATGACAAGTGAACTTTCAGGAAATGTTATAGATATCTGTCCTGTAGGAGCCCTAACCTCAAAACCATTTGCATTTAAAGCTCGTAATTGGGAATTAAAGGGAACAGAGACCATTGATGTTACTGATGCTGTTGGATCCAACATTCGAATTGATAGCAGAGGTCCAGAAGTCATGCGCATTGTTCCACGCTTAAATGAGGACATAAATGAGGAATGGATATCAGACAAGACTCGATTTTGTTATGACGGTTTGAAGAGGCAAAGGTTGAATGACCCTATGATTCGTGGTGCTGATGGACGCTTTAAGCCCGTAAGCTGGCGTGATGCCCTTGCTGTTGTTGCTGAGATGGCTCATAAAGTTAAGCCAGAAGAAATTGTTGGGGTTGCTGGTCAGCTGTCTGATGCCGAGTCCATGATGGCACTAAAAGACTTTTTAAATAAAATGGGGTCTAACAATGTGTGGTGCGAAGGAAATGGTTCCAATCGTGATGCTGATCTTCGATCTGGATATATAATGAACAGTAGCATTGCTGGACTTGAGAAGGCAGATGCTTTTCTATTGGTTGGCACCCAGCCAAGAGTAGAAGCTGCAATTGTAAATGCTAGAATCCGGAAGACAGTGTTATCTAACCAAGCCAAGGTTGGGTACGTTGGTCCTGAAGCTGATTTAAACTATGAACACCAGCATCTTGGAACAGGCCCCGATACACTTCTAGAACTTGCTGAGCGTCGCCACCCCTTTTCCTCAGTCCTCTTAAATGCCAAAAACCCTGCCATTATTGTTGGTGCTGGGCTGTTTGAGAGAAAAGACAAGGATGCAATTTTCTCAGCCCTTGCAACCATTGCCAAATATGCTGATGCTGTAAGGCCTGATTGGAATGGATTTAATGTACTGCTTCTCAAAGCCGCCCAGGCTGCAGCACTTGACCTTGGACTTGTGCCAGAATCTGAAAACAGCATTGAGTCTGCAAAATTTGTCTACCTGATGGGTGCTGATGATGTTAACTTAGACAAGATTCCATCTGATGCATTTGTGGTTTATCAAGGGCATCATGGCGACCGGGGTGTGTATCGGGCTAATGTCATCCTCCCTGCAGCAGCGTTCAGTGAAAAGGAAGGAACATATGTAAATACTGAAGGGTGCTCTCAGCAAACATTGCCTGCAGTTCCAACTGTCGGTGATGCCAGGGACGACTGGAAGATACTCCGTGCTCTATCTGAGGTAGCAGGCGTGAAGCTGCCTTACGATACAGTTGGGACCCTCCGATCCCGGATAAAGACCGTGGCACCAAACATCTTAAACATAGACGAGAGAGAGCCAGCTACTTTTTCATTTTCGATTAAGCCTGAGACCACTCAGAAAATGGATTTGACTCCATTTGGTACTGCTGTTGATAATTTCTATATGACCGATTCCATCACCAGGGCATCAAAGATAATGGCACAATGCAGTGCGTTGCTATTGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Fer2_4 Molybdopterin NADH-G_4Fe-4S_3 NADH_dhqG_C

Protein Analysis

743

Amino Acids

80.77

Weight (kDa)

6.24

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2_4 PF13510 70 - 146 6.3e-19 2Fe-2S iron-sulfur cluster binding domain
Fer2 PF00111 75 - 124 7.7e-07 2Fe-2S iron-sulfur cluster binding domain
NADH-G_4Fe-4S_3 PF10588 153 - 190 1.4e-16 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Fer4_Nqo3 PF22117 206 - 272 4.8e-33 NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain
Fer4_NDSU1 PF22151 285 - 335 5.6e-30 NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain
Molybdopterin PF00384 341 - 661 1.9e-109 Molybdopterin oxidoreductase
NADH_dhqG_C PF09326 701 - 736 1.1e-11 NADH-ubiquinone oxidoreductase subunit G, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37510 AT5G37510
fragaria_vesca FvH4_1g30070
malus_domestica MD09G1268900.v1.1 MD17G1267300.v1.1
prunus_persica Prupe.3G165400_v2.0.a1
pyrus_communis pycom09g18080 pycom17g26640
rosa_chinensis RchiOBHm_Chr3g0491991
rosa_laevigata RLG00000022799 RLG00000022807
rosa_multiflora Rmu_sc0005238.1_g000005 Rmu_sc0036946.1_g000001
rosa_roxburghii Rroxscaffold_6G00392660
rosa_rugosa Rorug03G0251000
rosa_samantha Rh3AG301000 Rh3BG337200 Rh3CG334300 Rh3DG336600
rosa_wichuraiana Rw3G026610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 935
AccB1I GGYRCC 2 cut(s) 1325, 2044
AccI GTMKAC 1 cut(s) 1737
AccII CGCG 2 cut(s) 197, 459
AccIII TCCGGA 2 cut(s) 106, 1368
AciI CCGC 8 cut(s) 45, 123, 141, 144, 147, 158, 346, 1665
AclWI GGATC 6 cut(s) 19, 549, 568, 888, 901, 2019
AcoI YGGCCR 2 cut(s) 120, 571
AcsI RAATTY 1 cut(s) 1730
AcuI CTGAAG 2 cut(s) 1437, 1914
AfaI GTAC 4 cut(s) 658, 1406, 1650, 2143
AfiI CCNNNNNNNGG 7 cut(s) 169, 176, 1074, 1396, 1401, 1934, 2181
AgsI TTSAA 5 cut(s) 653, 752, 1012, 1027, 2224
AjnI CCWGG 7 cut(s) 23, 38, 412, 537, 1668, 1943, 2180
AjuI GAANNNNNNNTTGG 4 cut(s) 479, 511, 1119, 1151
AluBI AGCT 9 cut(s) 97, 757, 839, 1074, 1153, 1346, 1421, 1996, 2081
AluI AGCT 9 cut(s) 97, 757, 839, 1074, 1153, 1346, 1421, 1996, 2081
Alw21I GWGCWC 3 cut(s) 99, 1904, 1972
Alw26I GTCTC 3 cut(s) 359, 860, 2102
AlwI GGATC 6 cut(s) 19, 549, 568, 888, 901, 2019
AlwNI CAGNNNCTG 1 cut(s) 1706
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 2 cut(s) 106, 1368
AoxI GGCC 9 cut(s) 27, 35, 42, 120, 180, 571, 715, 1456, 1625
ApaI GGGCCC 2 cut(s) 31, 184
ApeKI GCWGC 6 cut(s) 1346, 1673, 1676, 1853, 1856, 1996
ApoI RAATTY 1 cut(s) 1730
Asp700I GAANNNNTTC 1 cut(s) 1234
AspA2I CCTAGG 1 cut(s) 302
AspLEI GCGC 2 cut(s) 398, 936
AsuC2I CCSGG 6 cut(s) 92, 163, 170, 203, 1820, 2029
AsuHPI GGTGA 4 cut(s) 366, 478, 1949, 2170
AsuII TTCGAA 1 cut(s) 904
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 6 cut(s) 165, 617, 700, 920, 1412, 2016
AvrII CCTAGG 1 cut(s) 302
AxyI CCTNAGG 2 cut(s) 32, 252
BaeGI GKGCMC 2 cut(s) 31, 184
BaeI ACNNNNGTAYC 4 cut(s) 1396, 1429, 2133, 2166
BamHI GGATCC 1 cut(s) 893
BanI GGYRCC 2 cut(s) 1325, 2044
BanII GRGCYC 5 cut(s) 31, 99, 138, 184, 811
BarI GAAGNNNNNNTAC 2 cut(s) 1985, 2017
BbsI GAAGAC 1 cut(s) 1379
Bbv12I GWGCWC 3 cut(s) 99, 1904, 1972
BbvI GCAGC 6 cut(s) 1333, 1660, 1688, 1865, 1868, 1983
BccI CCATC 7 cut(s) 463, 1046, 1099, 1168, 1738, 1786, 2183
BceAI ACGGC 3 cut(s) 97, 135, 702
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 7 cut(s) 25, 40, 414, 539, 1670, 1945, 2182
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 6 cut(s) 92, 163, 170, 203, 1820, 2029
BcoDI GTCTC 3 cut(s) 359, 860, 2102
BfaI CTAG 3 cut(s) 303, 1362, 1472
BfmI CTRYAG 4 cut(s) 801, 1674, 1851, 1920
BfuI GTATCC 1 cut(s) 227
BglI GCCNNNNNGGC 2 cut(s) 452, 1670
BlnI CCTAGG 1 cut(s) 302
BlpI GCTNAGC 1 cut(s) 1482
Bme18I GGWCC 6 cut(s) 165, 617, 700, 920, 1412, 2016
BmeT110I CYCGRG 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 1379
BpmI CTGGAG 1 cut(s) 521
Bpu1102I GCTNAGC 1 cut(s) 1482
Bpu14I TTCGAA 1 cut(s) 904
BpuEI CTTGAG 2 cut(s) 83, 1316
BpuMI CCSGG 6 cut(s) 92, 163, 170, 203, 1820, 2029
BsaBI GATNNNNATC 1 cut(s) 1251
BsaI GGTCTC 2 cut(s) 860, 2102
BsaWI WCCGGW 2 cut(s) 106, 1368
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 464, 494
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 176, 1074, 1396, 1401, 1934, 2181
Bse118I RCCGGY 2 cut(s) 287, 335
Bse1I ACTGG 1 cut(s) 1958
Bse21I CCTNAGG 2 cut(s) 32, 252
Bse3DI GCAATG 4 cut(s) 330, 1284, 1599, 1913
Bse8I GATNNNNATC 1 cut(s) 1251
BseAI TCCGGA 2 cut(s) 106, 1368
BseBI CCWGG 7 cut(s) 25, 40, 414, 539, 1670, 1945, 2182
BseGI GGATG 5 cut(s) 83, 297, 490, 1579, 1842
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 7 cut(s) 169, 176, 1074, 1396, 1401, 1934, 2181
BseMI GCAATG 4 cut(s) 330, 1284, 1599, 1913
BseMII CTCAG 8 cut(s) 1092, 1473, 1518, 1599, 1919, 1968, 2097, 2129
BseNI ACTGG 1 cut(s) 1958
BseRI GAGGAG 2 cut(s) 44, 47
BseSI GKGCMC 2 cut(s) 31, 184
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 6 cut(s) 1333, 1660, 1688, 1865, 1868, 1983
BseYI CCCAGC 4 cut(s) 126, 689, 1329, 1547
Bsh1236I CGCG 2 cut(s) 197, 459
Bsh1285I CGRYCG 4 cut(s) 123, 174, 216, 1819
BshFI GGCC 9 cut(s) 29, 37, 44, 122, 182, 573, 717, 1458, 1627
BshNI GGYRCC 2 cut(s) 1325, 2044
BsiEI CGRYCG 4 cut(s) 123, 174, 216, 1819
BsiHKAI GWGCWC 3 cut(s) 99, 1904, 1972
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 3 cut(s) 754, 1961, 2029
BslI CCNNNNNNNGG 7 cut(s) 169, 176, 1074, 1396, 1401, 1934, 2181
BsmAI GTCTC 3 cut(s) 359, 860, 2102
BsmFI GGGAC 3 cut(s) 754, 1961, 2029
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 9 cut(s) 29, 37, 44, 122, 182, 573, 717, 1458, 1627
Bso31I GGTCTC 2 cut(s) 860, 2102
BsoBI CYCGRG 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 904
Bsp120I GGGCCC 2 cut(s) 27, 180
Bsp1286I GDGCHC 7 cut(s) 31, 99, 138, 184, 811, 1904, 1972
Bsp13I TCCGGA 2 cut(s) 106, 1368
Bsp1407I TGTACA 1 cut(s) 656
Bsp1720I GCTNAGC 1 cut(s) 1482
Bsp19I CCATGG 1 cut(s) 75
Bsp68I TCGCGA 2 cut(s) 197, 459
BspACI CCGC 8 cut(s) 45, 123, 141, 144, 147, 158, 346, 1665
BspANI GGCC 9 cut(s) 29, 37, 44, 122, 182, 573, 717, 1458, 1627
BspCNI CTCAG 8 cut(s) 1093, 1474, 1517, 1598, 1918, 1969, 2098, 2128
BspEI TCCGGA 2 cut(s) 106, 1368
BspFNI CGCG 2 cut(s) 197, 459
BspHI TCATGA 1 cut(s) 636
BspMAI CTGCAG 3 cut(s) 1678, 1855, 1924
BspPI GGATC 6 cut(s) 19, 549, 568, 888, 901, 2019
BspT104I TTCGAA 1 cut(s) 904
BspT107I GGYRCC 2 cut(s) 1325, 2044
BspTNI GGTCTC 2 cut(s) 860, 2102
BsrDI GCAATG 4 cut(s) 330, 1284, 1599, 1913
BsrFI RCCGGY 2 cut(s) 287, 335
BsrGI TGTACA 1 cut(s) 656
BsrI ACTGG 1 cut(s) 1958
BssAI RCCGGY 2 cut(s) 287, 335
BssT1I CCWWGG 5 cut(s) 75, 302, 703, 1395, 1687
Bst2UI CCWGG 7 cut(s) 25, 40, 414, 539, 1670, 1945, 2182
Bst4CI ACNGT 8 cut(s) 634, 663, 1007, 1280, 1378, 1933, 2011, 2041
Bst6I CTCTTC 2 cut(s) 584, 1007
BstAPI GCANNNNNTGC 2 cut(s) 1601, 1915
BstAUI TGTACA 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 8 cut(s) 18, 273, 405, 457, 1076, 1920, 1987, 2079
BstDSI CCRYGG 4 cut(s) 75, 117, 718, 2040
BstF5I GGATG 5 cut(s) 83, 297, 490, 1579, 1842
BstFNI CGCG 2 cut(s) 197, 459
BstHHI GCGC 2 cut(s) 398, 936
BstMAI GTCTC 3 cut(s) 359, 860, 2102
BstMCI CGRYCG 4 cut(s) 123, 174, 216, 1819
BstNI CCWGG 7 cut(s) 25, 40, 414, 539, 1670, 1945, 2182
BstNSI RCATGY 2 cut(s) 262, 352
BstPAI GACNNNNGTC 1 cut(s) 170
BstSFI CTRYAG 4 cut(s) 801, 1674, 1851, 1920
BstSLI GKGCMC 2 cut(s) 31, 184
BstUI CGCG 2 cut(s) 197, 459
BstV1I GCAGC 6 cut(s) 1333, 1660, 1688, 1865, 1868, 1983
BstV2I GAAGAC 1 cut(s) 1379
BstX2I RGATCY 2 cut(s) 560, 893
BstXI CCANNNNNNTGG 1 cut(s) 1448
BstYI RGATCY 2 cut(s) 560, 893
BstZI CGGCCG 1 cut(s) 120
Bsu36I CCTNAGG 2 cut(s) 32, 252
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 9 cut(s) 29, 37, 44, 122, 182, 573, 717, 1458, 1627
BtgI CCRYGG 4 cut(s) 75, 117, 718, 2040
BtsCI GGATG 5 cut(s) 83, 297, 490, 1579, 1842
BtsI GCAGTG 1 cut(s) 2215
BtsIMutI CAGTG 4 cut(s) 579, 1383, 1870, 2215
BtuMI TCGCGA 2 cut(s) 197, 459
Cac8I GCNNGC 8 cut(s) 18, 273, 405, 457, 1076, 1920, 1987, 2079
CaiI CAGNNNCTG 1 cut(s) 1706
CciI TCATGA 1 cut(s) 636
CfoI GCGC 2 cut(s) 398, 936
Cfr10I RCCGGY 2 cut(s) 287, 335
CseI GACGC 2 cut(s) 1065, 1475
Csp6I GTAC 4 cut(s) 657, 1405, 1649, 2142
CviAII CATG 8 cut(s) 76, 259, 349, 400, 637, 931, 1171, 1811
CviQI GTAC 4 cut(s) 657, 1405, 1649, 2142
DraI TTTAAA 3 cut(s) 835, 1194, 1428
EaeI YGGCCR 2 cut(s) 120, 571
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 584, 1007
EarI CTCTTC 2 cut(s) 584, 1007
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 120
Eco130I CCWWGG 5 cut(s) 75, 302, 703, 1395, 1687
Eco147I AGGCCT 1 cut(s) 1627
Eco24I GRGCYC 5 cut(s) 31, 99, 138, 184, 811
Eco31I GGTCTC 2 cut(s) 860, 2102
Eco32I GATATC 2 cut(s) 793, 978
Eco47I GGWCC 6 cut(s) 165, 617, 700, 920, 1412, 2016
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 1437, 1914
Eco81I CCTNAGG 2 cut(s) 32, 252
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 6 cut(s) 27, 28, 180, 700, 1457, 2016
EcoRII CCWGG 7 cut(s) 23, 38, 412, 537, 1668, 1943, 2180
EcoRV GATATC 2 cut(s) 793, 978
EcoT14I CCWWGG 5 cut(s) 75, 302, 703, 1395, 1687
EcoT22I ATGCAT 1 cut(s) 1789
EcoT38I GRGCYC 5 cut(s) 31, 99, 138, 184, 811
ErhI CCWWGG 5 cut(s) 75, 302, 703, 1395, 1687
FaeI CATG 8 cut(s) 79, 262, 352, 403, 640, 934, 1174, 1814
FaqI GGGAC 3 cut(s) 754, 1961, 2029
FatI CATG 8 cut(s) 75, 258, 348, 399, 636, 930, 1170, 1810
FauI CCCGC 2 cut(s) 148, 165
FauNDI CATATG 1 cut(s) 1882
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 1737
FokI GGATG 5 cut(s) 70, 284, 477, 1586, 1829
FriOI GRGCYC 5 cut(s) 31, 99, 138, 184, 811
FspAI RTGCGCAY 1 cut(s) 935
FspBI CTAG 3 cut(s) 303, 1362, 1472
FspI TGCGCA 1 cut(s) 935
GlaI GCGC 2 cut(s) 397, 935
GsaI CCCAGC 4 cut(s) 130, 693, 1333, 1551
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 9 cut(s) 29, 37, 44, 122, 182, 573, 717, 1458, 1627
HgaI GACGC 2 cut(s) 1065, 1475
HhaI GCGC 2 cut(s) 398, 936
Hin1II CATG 8 cut(s) 79, 262, 352, 403, 640, 934, 1174, 1814
Hin6I GCGC 2 cut(s) 396, 934
HinP1I GCGC 2 cut(s) 396, 934
HincII GTYRAC 2 cut(s) 295, 1762
HindII GTYRAC 2 cut(s) 295, 1762
HindIII AAGCTT 1 cut(s) 755
HpaI GTTAAC 1 cut(s) 1762
HphI GGTGA 4 cut(s) 366, 478, 1949, 2170
Hpy166II GTNNAC 8 cut(s) 117, 229, 295, 604, 659, 770, 1738, 1762
Hpy188I TCNGA 9 cut(s) 560, 565, 982, 1159, 1708, 1783, 1978, 2024, 2118
Hpy8I GTNNAC 8 cut(s) 117, 229, 295, 604, 659, 770, 1738, 1762
Hpy99I CGWCG 3 cut(s) 362, 389, 1491
HpyAV CCTTC 6 cut(s) 445, 455, 1220, 1294, 1868, 1889
HpyCH4III ACNGT 8 cut(s) 634, 663, 1007, 1280, 1378, 1933, 2011, 2041
HpyCH4IV ACGT 2 cut(s) 747, 1407
HpySE526I ACGT 2 cut(s) 747, 1407
Hsp92II CATG 8 cut(s) 79, 262, 352, 403, 640, 934, 1174, 1814
HspAI GCGC 2 cut(s) 396, 934
KflI GGGWCCC 1 cut(s) 2016
Kpn2I TCCGGA 2 cut(s) 106, 1368
Ksp22I TGATCA 1 cut(s) 514
KspAI GTTAAC 1 cut(s) 1762
LmnI GCTCC 5 cut(s) 57, 68, 94, 109, 806
Lsp1109I GCAGC 6 cut(s) 1333, 1660, 1688, 1865, 1868, 1983
MaeI CTAG 3 cut(s) 303, 1362, 1472
MaeII ACGT 2 cut(s) 747, 1407
MaeIII GTNAC 3 cut(s) 79, 372, 877
MboII GAAGA 6 cut(s) 601, 1024, 1139, 1247, 1384, 1969
MfeI CAATTG 1 cut(s) 1350
MflI RGATCY 2 cut(s) 560, 893
MhlI GDGCHC 7 cut(s) 31, 99, 138, 184, 811, 1904, 1972
MlyI GAGTC 5 cut(s) 634, 982, 1175, 1730, 2125
MmeI TCCRAC 3 cut(s) 871, 921, 1952
Mph1103I ATGCAT 1 cut(s) 1789
MroI TCCGGA 2 cut(s) 106, 1368
MroXI GAANNNNTTC 1 cut(s) 1234
MslI CAYNNNNRTG 2 cut(s) 263, 584
MspA1I CMGCKG 2 cut(s) 149, 1153
MunI CAATTG 1 cut(s) 1350
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 7 cut(s) 25, 40, 414, 539, 1670, 1945, 2182
MvnI CGCG 2 cut(s) 197, 459
NciI CCSGG 6 cut(s) 92, 163, 170, 203, 1820, 2029
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 1882
NlaIII CATG 8 cut(s) 79, 262, 352, 403, 640, 934, 1174, 1814
NmeAIII GCCGAG 2 cut(s) 39, 1189
NmuCI GTSAC 2 cut(s) 79, 372
NruI TCGCGA 2 cut(s) 197, 459
NsbI TGCGCA 1 cut(s) 935
NsiI ATGCAT 1 cut(s) 1789
NspI RCATGY 2 cut(s) 262, 352
NspV TTCGAA 1 cut(s) 904
PagI TCATGA 1 cut(s) 636
PasI CCCWGGG 1 cut(s) 39
PceI AGGCCT 1 cut(s) 1627
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 222
PctI GAATGC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 1234
PfoI TCCNGGA 2 cut(s) 537, 2027
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 5 cut(s) 634, 982, 1174, 1729, 2125
PpsI GAGTC 5 cut(s) 634, 982, 1174, 1729, 2125
PpuMI RGGWCCY 2 cut(s) 700, 2016
PshAI GACNNNNGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 99
Psp5II RGGWCCY 2 cut(s) 700, 2016
Psp6I CCWGG 7 cut(s) 23, 38, 412, 537, 1668, 1943, 2180
PspFI CCCAGC 4 cut(s) 126, 689, 1329, 1547
PspGI CCWGG 7 cut(s) 23, 38, 412, 537, 1668, 1943, 2180
PspOMI GGGCCC 2 cut(s) 27, 180
PspPPI RGGWCCY 2 cut(s) 700, 2016
PstI CTGCAG 3 cut(s) 1678, 1855, 1924
PstNI CAGNNNCTG 1 cut(s) 1706
PsuI RGATCY 2 cut(s) 560, 893
PvuI CGATCG 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 1153
RruI TCGCGA 2 cut(s) 197, 459
RsaI GTAC 4 cut(s) 658, 1406, 1650, 2143
RsaNI GTAC 4 cut(s) 657, 1405, 1649, 2142
RseI CAYNNNNRTG 2 cut(s) 263, 584
SacI GAGCTC 1 cut(s) 99
SchI GAGTC 5 cut(s) 634, 982, 1175, 1730, 2125
SduI GDGCHC 7 cut(s) 31, 99, 138, 184, 811, 1904, 1972
SfcI CTRYAG 4 cut(s) 801, 1674, 1851, 1920
SfuI TTCGAA 1 cut(s) 904
SgrAI CRCCGGYG 1 cut(s) 287
SinI GGWCC 6 cut(s) 165, 617, 700, 920, 1412, 2016
SmiMI CAYNNNNRTG 2 cut(s) 263, 584
SmlI CTYRAG 2 cut(s) 98, 1295
SmoI CTYRAG 2 cut(s) 98, 1295
SseBI AGGCCT 1 cut(s) 1627
SsiI CCGC 8 cut(s) 45, 123, 141, 144, 147, 158, 346, 1665
SspMI CTAG 3 cut(s) 303, 1362, 1472
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 1627
StyI CCWWGG 5 cut(s) 75, 302, 703, 1395, 1687
TaaI ACNGT 8 cut(s) 634, 663, 1007, 1280, 1378, 1933, 2011, 2041
TaiI ACGT 2 cut(s) 750, 1410
TaqI TCGA 6 cut(s) 216, 360, 904, 991, 1258, 2096
TaqII GACCGA 1 cut(s) 2183
TatI WGTACW 2 cut(s) 656, 1648
TauI GCSGC 6 cut(s) 47, 125, 146, 149, 348, 1667
TscAI CASTG 4 cut(s) 586, 1383, 1870, 2215
TseFI GTSAC 2 cut(s) 79, 372
TseI GCWGC 6 cut(s) 1346, 1673, 1676, 1853, 1856, 1996
Tsp45I GTSAC 2 cut(s) 79, 372
TspDTI ATGAA 6 cut(s) 434, 500, 602, 1289, 1449, 2079
TspGWI ACGGA 3 cut(s) 246, 253, 1955
TspRI CASTG 4 cut(s) 586, 1383, 1870, 2215
VpaK11BI GGWCC 6 cut(s) 165, 617, 700, 920, 1412, 2016
XapI RAATTY 1 cut(s) 1730
XbaI TCTAGA 1 cut(s) 1471
XceI RCATGY 2 cut(s) 262, 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 1397, 2119
XmaJI CCTAGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 1737
XmnI GAANNNNTTC 1 cut(s) 1234
XspI CTAG 3 cut(s) 303, 1362, 1472
Zsp2I ATGCAT 1 cut(s) 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.