Rh3BG337200

Belongs to the complex I 75 kDa subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011004
Physical Location & Seq
Reverse (-)
36048029 .. 36052856
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG337200.1

Sequence Viewer

Length: 2217 bp
ATGGGGTTGGGATCGCTTGCTTCCAGGGCCCTAAGGCCCAGGGCCGCAAGGCTCCTCCTCGGCTCCCAGAGAACCATGGTCACATCCACCCCGGAGCTCAAGAATCCGGAGCCGTCCACGGCCCCCGCCGCCGCCGACCTCCCGCCCCGGACCCCGGTCGGTGGGGCCCGAATCCACTTCGCGAACCCGGACGATGCGATCGAGGTGTTCGTGGATGGATACCCTGTGAAAATCCCCAAGGGCATGTCCGTGTTGCAAGCGTGTGAGGTCGCCGGTGTTGACATCCCTAGGTTTTGCTACCACAGCAGATTGTCCATTGCCGGTAATTGCCGTATGTGTCTCGTCGAGGTTGAGAAGTCACCCAAGCCCGTCGCCTCTTGCGCCATGCCTGCTATGCCTGGTATGAAAATTAAGACTGACACTCCAATAGCCAAGAAGGCTCGCGAAGGTGTGATGGAGTTTCTGTTGATGAATCATCCTTTGGATTGTCCAATTTGTGATCAGGGTGGAGAATGTGATCTCCAGGATCAGTCTATGGCATTCGGATCTGATCGTGGCCGATTCACTGAAATGAAGAGATCAGTTGTGGACAAGAATCTTGGTCCTTTGGTCAAGACTGTCATGACTCGCTGTATTCAATGTACACGGTGCGTTCGGTTTGCAACAGAGGTCGCTGGGGTTCAGGACCTTGGAATGTTAGGCCGTGGAAGTGGAGAGGAAATTGGGACTTACGTTGAAAAGCTTATGACAAGTGAACTTTCAGGAAATGTTATAGATATCTGTCCTGTAGGAGCCCTAACCTCAAAACCATTTGCATTTAAAGCTCGTAATTGGGAATTAAAGGGAACAGAGACCATTGATGTTACTGATGCTGTTGGATCCAACATTCGAATTGATAGCAGAGGTCCAGAAGTCATGCGCATTGTTCCACGCTTAAATGAGGACATAAATGAGGAATGGATATCAGACAAGACTCGATTTTGTTATGACGGTTTGAAGAGGCAAAGGTTGAATGACCCTATGATTCGTGGTGCTGATGGACGCTTTAAGCCCGTGAGCTGGCGTGATGCCCTTGCTGTTGTTGCTGAGATGGCTCATAAAGTTAAGCCAGAAGAAATTGTTGGGGTTGCTGGTCAGCTGTCTGATGCCGAGTCCATGATGGCACTAAAAGACTTTTTAAATAAAATGGGGTCTAACAATGTGTGGTGCGAAGGAAATGGTTCCAATCGTGATGCTGATCTTCGATCTGGATATATAATGAACAGTAGCATTGCTGGACTTGAGAAGGCAGATGCTTTTCTATTGGTTGGCACCCAGCCAAGAGTAGAAGCTGCTATTGTAAATGCTAGAATCCGGAAGACAGTGTTATCTAACCAAGCCAAGGTTGGGTACGTTGGTCCTGAAGCTGATTTAAACTATGAACACCAGCATCTTGGAACAGGCCCCGATACACTTCTAGAACTTGCTGAGCGTCGCCACCCCTTTTCCTCAGTCCTCTTAAATGCCAAAAACCCTGCCATTATTGTTGGTGCTGGGCTGTTTGAGAGAAAAGACAAGGATGCAATTTTCTCAGCCCTTGAAACCATTGCCAAATATGCTGATGCTGTAAGGCCTGATTGGAATGGATTTAATGTACTGCTTCTCAAAGCCGCCCAGGCTGCAGCACTTGACCTTGGACTTGTGCCAGAATCTGAAAACAGCATTGAGTCTGCAAAATTTGTTTACCTGATGGGTGCTGATGATGTTAACTTAGACAAGGTTCCATCTGATGCATTTGTGGTTTATCAAGGGCATCATGGCGACCGGGGTGTGTATCGGGCTAATGTCATCCTCCCTGCAGCAGCGTTCAGTGAAAAGGAAGGAACATATGTAAATACTGAAGGGTGCTCTCAGCAAACATTGCCTGCAGTTCCAACTGTCGGTGATGCCAGGGACGACTGGAAGATACTCCGTGCTCTATCTGAGGTAGCAGGCGTGAAGCTGCCTTACGATGCAGTTGGGACCCTCCGATCCCGGATAAAGACCGTGGCACCAAACATCTTAAACATAGACGAGAGAGAGCCAGCTACTTTTTCGTTTTCGATTAAGCCTGAGACCACTCAGAAAATGGATTTGACTCCATTTGGTACTGCTGTTGATAATTTCTATATGACCGATTCCATCACCAGGGCATCAAAGATAATGGCACAATGCAGTGCGTTGCTATTGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Fer2_4 Molybdopterin NADH-G_4Fe-4S_3 NADH_dhqG_C

Protein Analysis

738

Amino Acids

80.26

Weight (kDa)

6.24

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2_4 PF13510 65 - 141 6.2e-19 2Fe-2S iron-sulfur cluster binding domain
Fer2 PF00111 70 - 119 7.7e-07 2Fe-2S iron-sulfur cluster binding domain
NADH-G_4Fe-4S_3 PF10588 148 - 185 1.4e-16 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Fer4_Nqo3 PF22117 201 - 267 4.7e-33 NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain
Fer4_NDSU1 PF22151 280 - 330 5.6e-30 NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain
Molybdopterin PF00384 336 - 656 4.1e-109 Molybdopterin oxidoreductase
NADH_dhqG_C PF09326 696 - 731 1.1e-11 NADH-ubiquinone oxidoreductase subunit G, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37510 AT5G37510
fragaria_vesca FvH4_1g30070
malus_domestica MD09G1268900.v1.1 MD17G1267300.v1.1
prunus_persica Prupe.3G165400_v2.0.a1
pyrus_communis pycom09g18080 pycom17g26640
rosa_chinensis RchiOBHm_Chr3g0491991
rosa_laevigata RLG00000022799 RLG00000022807
rosa_multiflora Rmu_sc0005238.1_g000005 Rmu_sc0036946.1_g000001
rosa_roxburghii Rroxscaffold_6G00392660
rosa_rugosa Rorug03G0251000
rosa_samantha Rh3AG301000 Rh3BG337200 Rh3CG334300 Rh3DG336600
rosa_wichuraiana Rw3G026610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 920
AccB1I GGYRCC 2 cut(s) 1310, 2029
AccII CGCG 2 cut(s) 182, 444
AccIII TCCGGA 2 cut(s) 106, 1353
AciI CCGC 6 cut(s) 45, 126, 129, 132, 143, 1650
AclWI GGATC 6 cut(s) 19, 534, 553, 873, 886, 2004
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 1 cut(s) 1715
AcuI CTGAAG 2 cut(s) 1422, 1899
AfaI GTAC 4 cut(s) 643, 1391, 1635, 2128
AfiI CCNNNNNNNGG 7 cut(s) 154, 161, 1059, 1381, 1386, 1919, 2166
AgsI TTSAA 6 cut(s) 638, 737, 997, 1012, 1580, 2209
AjnI CCWGG 7 cut(s) 23, 38, 397, 522, 1653, 1928, 2165
AjuI GAANNNNNNNTTGG 4 cut(s) 464, 496, 1104, 1136
AluBI AGCT 9 cut(s) 97, 742, 824, 1059, 1138, 1331, 1406, 1981, 2066
AluI AGCT 9 cut(s) 97, 742, 824, 1059, 1138, 1331, 1406, 1981, 2066
Alw21I GWGCWC 3 cut(s) 99, 1889, 1957
Alw26I GTCTC 3 cut(s) 344, 845, 2087
AlwI GGATC 6 cut(s) 19, 534, 553, 873, 886, 2004
AlwNI CAGNNNCTG 1 cut(s) 1691
Aor13HI TCCGGA 2 cut(s) 106, 1353
AoxI GGCC 9 cut(s) 27, 35, 42, 120, 165, 556, 700, 1441, 1610
ApaI GGGCCC 2 cut(s) 31, 169
ApeKI GCWGC 6 cut(s) 1331, 1658, 1661, 1838, 1841, 1981
ApoI RAATTY 1 cut(s) 1715
Asp700I GAANNNNTTC 1 cut(s) 1219
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 2 cut(s) 383, 921
AsuC2I CCSGG 6 cut(s) 92, 148, 155, 188, 1805, 2014
AsuHPI GGTGA 3 cut(s) 351, 1934, 2155
AsuII TTCGAA 1 cut(s) 889
AvaII GGWCC 6 cut(s) 150, 602, 685, 905, 1397, 2001
AvrII CCTAGG 1 cut(s) 287
AxyI CCTNAGG 1 cut(s) 32
BaeGI GKGCMC 2 cut(s) 31, 169
BaeI ACNNNNGTAYC 4 cut(s) 1381, 1414, 2118, 2151
BamHI GGATCC 1 cut(s) 878
BanI GGYRCC 2 cut(s) 1310, 2029
BanII GRGCYC 4 cut(s) 31, 99, 169, 796
BarI GAAGNNNNNNTAC 2 cut(s) 1970, 2002
BbsI GAAGAC 1 cut(s) 1364
Bbv12I GWGCWC 3 cut(s) 99, 1889, 1957
BbvI GCAGC 6 cut(s) 1318, 1645, 1673, 1850, 1853, 1968
BccI CCATC 8 cut(s) 209, 448, 1031, 1084, 1153, 1723, 1771, 2168
BceAI ACGGC 4 cut(s) 97, 135, 315, 687
BciT130I CCWGG 7 cut(s) 25, 40, 399, 524, 1655, 1930, 2167
BciVI GTATCC 1 cut(s) 212
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 6 cut(s) 92, 148, 155, 188, 1805, 2014
BcoDI GTCTC 3 cut(s) 344, 845, 2087
BfaI CTAG 3 cut(s) 288, 1347, 1457
BfmI CTRYAG 4 cut(s) 786, 1659, 1836, 1905
BfuI GTATCC 1 cut(s) 212
BglI GCCNNNNNGGC 2 cut(s) 437, 1655
BlnI CCTAGG 1 cut(s) 287
BlpI GCTNAGC 1 cut(s) 1467
Bme18I GGWCC 6 cut(s) 150, 602, 685, 905, 1397, 2001
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 1364
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 1467
Bpu14I TTCGAA 1 cut(s) 889
BpuEI CTTGAG 2 cut(s) 83, 1301
BpuMI CCSGG 6 cut(s) 92, 148, 155, 188, 1805, 2014
BsaBI GATNNNNATC 1 cut(s) 1236
BsaI GGTCTC 2 cut(s) 845, 2087
BsaWI WCCGGW 2 cut(s) 106, 1353
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 449, 479
Bsc4I CCNNNNNNNGG 7 cut(s) 154, 161, 1059, 1381, 1386, 1919, 2166
Bse118I RCCGGY 2 cut(s) 272, 320
Bse1I ACTGG 1 cut(s) 1943
Bse21I CCTNAGG 1 cut(s) 32
Bse3DI GCAATG 4 cut(s) 315, 1269, 1584, 1898
Bse8I GATNNNNATC 1 cut(s) 1236
BseAI TCCGGA 2 cut(s) 106, 1353
BseBI CCWGG 7 cut(s) 25, 40, 399, 524, 1655, 1930, 2167
BseGI GGATG 6 cut(s) 83, 220, 282, 475, 1564, 1827
BseJI GATNNNNATC 1 cut(s) 1236
BseLI CCNNNNNNNGG 7 cut(s) 154, 161, 1059, 1381, 1386, 1919, 2166
BseMI GCAATG 4 cut(s) 315, 1269, 1584, 1898
BseMII CTCAG 8 cut(s) 1077, 1458, 1503, 1584, 1904, 1953, 2082, 2114
BseNI ACTGG 1 cut(s) 1943
BseRI GAGGAG 2 cut(s) 44, 47
BseSI GKGCMC 2 cut(s) 31, 169
BseXI GCAGC 6 cut(s) 1318, 1645, 1673, 1850, 1853, 1968
BseYI CCCAGC 3 cut(s) 674, 1314, 1532
Bsh1236I CGCG 2 cut(s) 182, 444
Bsh1285I CGRYCG 3 cut(s) 159, 201, 1804
BshFI GGCC 9 cut(s) 29, 37, 44, 122, 167, 558, 702, 1443, 1612
BshNI GGYRCC 2 cut(s) 1310, 2029
BsiEI CGRYCG 3 cut(s) 159, 201, 1804
BsiHKAI GWGCWC 3 cut(s) 99, 1889, 1957
BslFI GGGAC 3 cut(s) 739, 1946, 2014
BslI CCNNNNNNNGG 7 cut(s) 154, 161, 1059, 1381, 1386, 1919, 2166
BsmAI GTCTC 3 cut(s) 344, 845, 2087
BsmFI GGGAC 3 cut(s) 739, 1946, 2014
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 9 cut(s) 29, 37, 44, 122, 167, 558, 702, 1443, 1612
Bso31I GGTCTC 2 cut(s) 845, 2087
Bsp119I TTCGAA 1 cut(s) 889
Bsp120I GGGCCC 2 cut(s) 27, 165
Bsp1286I GDGCHC 6 cut(s) 31, 99, 169, 796, 1889, 1957
Bsp13I TCCGGA 2 cut(s) 106, 1353
Bsp1407I TGTACA 1 cut(s) 641
Bsp1720I GCTNAGC 1 cut(s) 1467
Bsp19I CCATGG 1 cut(s) 75
Bsp68I TCGCGA 2 cut(s) 182, 444
BspACI CCGC 6 cut(s) 45, 126, 129, 132, 143, 1650
BspANI GGCC 9 cut(s) 29, 37, 44, 122, 167, 558, 702, 1443, 1612
BspCNI CTCAG 8 cut(s) 1078, 1459, 1502, 1583, 1903, 1954, 2083, 2113
BspEI TCCGGA 2 cut(s) 106, 1353
BspFNI CGCG 2 cut(s) 182, 444
BspHI TCATGA 1 cut(s) 621
BspMAI CTGCAG 3 cut(s) 1663, 1840, 1909
BspPI GGATC 6 cut(s) 19, 534, 553, 873, 886, 2004
BspT104I TTCGAA 1 cut(s) 889
BspT107I GGYRCC 2 cut(s) 1310, 2029
BspTNI GGTCTC 2 cut(s) 845, 2087
BsrDI GCAATG 4 cut(s) 315, 1269, 1584, 1898
BsrFI RCCGGY 2 cut(s) 272, 320
BsrGI TGTACA 1 cut(s) 641
BsrI ACTGG 1 cut(s) 1943
BssAI RCCGGY 2 cut(s) 272, 320
BssT1I CCWWGG 6 cut(s) 75, 237, 287, 688, 1380, 1672
Bst2UI CCWGG 7 cut(s) 25, 40, 399, 524, 1655, 1930, 2167
Bst4CI ACNGT 7 cut(s) 619, 648, 992, 1265, 1363, 1918, 2026
Bst6I CTCTTC 2 cut(s) 569, 992
BstAPI GCANNNNNTGC 1 cut(s) 1900
BstAUI TGTACA 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 889
BstC8I GCNNGC 8 cut(s) 18, 258, 390, 442, 1061, 1905, 1972, 2064
BstDSI CCRYGG 4 cut(s) 75, 117, 703, 2025
BstF5I GGATG 6 cut(s) 83, 220, 282, 475, 1564, 1827
BstFNI CGCG 2 cut(s) 182, 444
BstHHI GCGC 2 cut(s) 383, 921
BstMAI GTCTC 3 cut(s) 344, 845, 2087
BstMCI CGRYCG 3 cut(s) 159, 201, 1804
BstNI CCWGG 7 cut(s) 25, 40, 399, 524, 1655, 1930, 2167
BstNSI RCATGY 1 cut(s) 247
BstPAI GACNNNNGTC 1 cut(s) 155
BstSFI CTRYAG 4 cut(s) 786, 1659, 1836, 1905
BstSLI GKGCMC 2 cut(s) 31, 169
BstUI CGCG 2 cut(s) 182, 444
BstV1I GCAGC 6 cut(s) 1318, 1645, 1673, 1850, 1853, 1968
BstV2I GAAGAC 1 cut(s) 1364
BstX2I RGATCY 2 cut(s) 545, 878
BstXI CCANNNNNNTGG 1 cut(s) 1433
BstYI RGATCY 2 cut(s) 545, 878
Bsu36I CCTNAGG 1 cut(s) 32
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 9 cut(s) 29, 37, 44, 122, 167, 558, 702, 1443, 1612
BtgI CCRYGG 4 cut(s) 75, 117, 703, 2025
BtsCI GGATG 6 cut(s) 83, 220, 282, 475, 1564, 1827
BtsI GCAGTG 1 cut(s) 2200
BtsIMutI CAGTG 4 cut(s) 564, 1368, 1855, 2200
BtuMI TCGCGA 2 cut(s) 182, 444
Cac8I GCNNGC 8 cut(s) 18, 258, 390, 442, 1061, 1905, 1972, 2064
CaiI CAGNNNCTG 1 cut(s) 1691
CciI TCATGA 1 cut(s) 621
CfoI GCGC 2 cut(s) 383, 921
Cfr10I RCCGGY 2 cut(s) 272, 320
CseI GACGC 2 cut(s) 1050, 1460
Csp6I GTAC 4 cut(s) 642, 1390, 1634, 2127
CviAII CATG 7 cut(s) 76, 244, 385, 622, 916, 1156, 1796
CviQI GTAC 4 cut(s) 642, 1390, 1634, 2127
DraI TTTAAA 3 cut(s) 820, 1179, 1413
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 569, 992
EarI CTCTTC 2 cut(s) 569, 992
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 6 cut(s) 75, 237, 287, 688, 1380, 1672
Eco147I AGGCCT 1 cut(s) 1612
Eco24I GRGCYC 4 cut(s) 31, 99, 169, 796
Eco31I GGTCTC 2 cut(s) 845, 2087
Eco32I GATATC 2 cut(s) 778, 963
Eco47I GGWCC 6 cut(s) 150, 602, 685, 905, 1397, 2001
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 1422, 1899
Eco81I CCTNAGG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 6 cut(s) 27, 28, 165, 685, 1442, 2001
EcoRII CCWGG 7 cut(s) 23, 38, 397, 522, 1653, 1928, 2165
EcoRV GATATC 2 cut(s) 778, 963
EcoT14I CCWWGG 6 cut(s) 75, 237, 287, 688, 1380, 1672
EcoT22I ATGCAT 1 cut(s) 1774
EcoT38I GRGCYC 4 cut(s) 31, 99, 169, 796
ErhI CCWWGG 6 cut(s) 75, 237, 287, 688, 1380, 1672
FaeI CATG 7 cut(s) 79, 247, 388, 625, 919, 1159, 1799
FaqI GGGAC 3 cut(s) 739, 1946, 2014
FatI CATG 7 cut(s) 75, 243, 384, 621, 915, 1155, 1795
FauI CCCGC 2 cut(s) 133, 150
FauNDI CATATG 1 cut(s) 1867
FbaI TGATCA 1 cut(s) 499
FokI GGATG 6 cut(s) 70, 227, 269, 462, 1571, 1814
FriOI GRGCYC 4 cut(s) 31, 99, 169, 796
FspAI RTGCGCAY 1 cut(s) 920
FspBI CTAG 3 cut(s) 288, 1347, 1457
FspI TGCGCA 1 cut(s) 920
GlaI GCGC 2 cut(s) 382, 920
GsaI CCCAGC 3 cut(s) 678, 1318, 1536
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 9 cut(s) 29, 37, 44, 122, 167, 558, 702, 1443, 1612
HgaI GACGC 2 cut(s) 1050, 1460
HhaI GCGC 2 cut(s) 383, 921
Hin1II CATG 7 cut(s) 79, 247, 388, 625, 919, 1159, 1799
Hin6I GCGC 2 cut(s) 381, 919
HinP1I GCGC 2 cut(s) 381, 919
HincII GTYRAC 2 cut(s) 280, 1747
HindII GTYRAC 2 cut(s) 280, 1747
HindIII AAGCTT 1 cut(s) 740
HpaI GTTAAC 1 cut(s) 1747
HphI GGTGA 3 cut(s) 351, 1934, 2155
Hpy166II GTNNAC 7 cut(s) 117, 280, 589, 644, 755, 1723, 1747
Hpy188I TCNGA 9 cut(s) 545, 550, 967, 1144, 1693, 1768, 1963, 2009, 2103
Hpy8I GTNNAC 7 cut(s) 117, 280, 589, 644, 755, 1723, 1747
Hpy99I CGWCG 3 cut(s) 347, 374, 1476
HpyAV CCTTC 6 cut(s) 430, 440, 1205, 1279, 1853, 1874
HpyCH4III ACNGT 7 cut(s) 619, 648, 992, 1265, 1363, 1918, 2026
HpyCH4IV ACGT 2 cut(s) 732, 1392
HpySE526I ACGT 2 cut(s) 732, 1392
Hsp92II CATG 7 cut(s) 79, 247, 388, 625, 919, 1159, 1799
HspAI GCGC 2 cut(s) 381, 919
KflI GGGWCCC 1 cut(s) 2001
Kpn2I TCCGGA 2 cut(s) 106, 1353
Ksp22I TGATCA 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 1747
LmnI GCTCC 5 cut(s) 57, 68, 94, 109, 791
Lsp1109I GCAGC 6 cut(s) 1318, 1645, 1673, 1850, 1853, 1968
MaeI CTAG 3 cut(s) 288, 1347, 1457
MaeII ACGT 2 cut(s) 732, 1392
MaeIII GTNAC 3 cut(s) 79, 357, 862
MboII GAAGA 6 cut(s) 586, 1009, 1124, 1232, 1369, 1954
MflI RGATCY 2 cut(s) 545, 878
MhlI GDGCHC 6 cut(s) 31, 99, 169, 796, 1889, 1957
MlyI GAGTC 5 cut(s) 619, 967, 1160, 1715, 2110
MmeI TCCRAC 3 cut(s) 856, 906, 1937
Mph1103I ATGCAT 1 cut(s) 1774
MroI TCCGGA 2 cut(s) 106, 1353
MroXI GAANNNNTTC 1 cut(s) 1219
MslI CAYNNNNRTG 2 cut(s) 248, 569
MspA1I CMGCKG 1 cut(s) 1138
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 7 cut(s) 25, 40, 399, 524, 1655, 1930, 2167
MvnI CGCG 2 cut(s) 182, 444
NciI CCSGG 6 cut(s) 92, 148, 155, 188, 1805, 2014
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 1867
NlaIII CATG 7 cut(s) 79, 247, 388, 625, 919, 1159, 1799
NmeAIII GCCGAG 2 cut(s) 39, 1174
NmuCI GTSAC 2 cut(s) 79, 357
NruI TCGCGA 2 cut(s) 182, 444
NsbI TGCGCA 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 1774
NspI RCATGY 1 cut(s) 247
NspV TTCGAA 1 cut(s) 889
PagI TCATGA 1 cut(s) 621
PasI CCCWGGG 1 cut(s) 39
PceI AGGCCT 1 cut(s) 1612
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 207
PctI GAATGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 1219
PfeI GAWTC 9 cut(s) 103, 171, 472, 561, 595, 1024, 1350, 1688, 2156
PfoI TCCNGGA 2 cut(s) 522, 2012
Ple19I CGATCG 1 cut(s) 201
PleI GAGTC 5 cut(s) 619, 967, 1159, 1714, 2110
PpsI GAGTC 5 cut(s) 619, 967, 1159, 1714, 2110
PpuMI RGGWCCY 2 cut(s) 685, 2001
PshAI GACNNNNGTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 99
Psp5II RGGWCCY 2 cut(s) 685, 2001
Psp6I CCWGG 7 cut(s) 23, 38, 397, 522, 1653, 1928, 2165
PspFI CCCAGC 3 cut(s) 674, 1314, 1532
PspGI CCWGG 7 cut(s) 23, 38, 397, 522, 1653, 1928, 2165
PspOMI GGGCCC 2 cut(s) 27, 165
PspPPI RGGWCCY 2 cut(s) 685, 2001
PstI CTGCAG 3 cut(s) 1663, 1840, 1909
PstNI CAGNNNCTG 1 cut(s) 1691
PsuI RGATCY 2 cut(s) 545, 878
PvuI CGATCG 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 1138
RruI TCGCGA 2 cut(s) 182, 444
RsaI GTAC 4 cut(s) 643, 1391, 1635, 2128
RsaNI GTAC 4 cut(s) 642, 1390, 1634, 2127
RseI CAYNNNNRTG 2 cut(s) 248, 569
SacI GAGCTC 1 cut(s) 99
SchI GAGTC 5 cut(s) 619, 967, 1160, 1715, 2110
SduI GDGCHC 6 cut(s) 31, 99, 169, 796, 1889, 1957
SfcI CTRYAG 4 cut(s) 786, 1659, 1836, 1905
SfuI TTCGAA 1 cut(s) 889
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 6 cut(s) 150, 602, 685, 905, 1397, 2001
SmiMI CAYNNNNRTG 2 cut(s) 248, 569
SmlI CTYRAG 2 cut(s) 98, 1280
SmoI CTYRAG 2 cut(s) 98, 1280
SseBI AGGCCT 1 cut(s) 1612
SsiI CCGC 6 cut(s) 45, 126, 129, 132, 143, 1650
SspMI CTAG 3 cut(s) 288, 1347, 1457
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 1612
StyI CCWWGG 6 cut(s) 75, 237, 287, 688, 1380, 1672
TaaI ACNGT 7 cut(s) 619, 648, 992, 1265, 1363, 1918, 2026
TaiI ACGT 2 cut(s) 735, 1395
TaqI TCGA 6 cut(s) 201, 345, 889, 976, 1243, 2081
TaqII GACCGA 1 cut(s) 2168
TatI WGTACW 2 cut(s) 641, 1633
TauI GCSGC 4 cut(s) 47, 131, 134, 1652
TfiI GAWTC 9 cut(s) 103, 171, 472, 561, 595, 1024, 1350, 1688, 2156
TscAI CASTG 4 cut(s) 571, 1368, 1855, 2200
TseFI GTSAC 2 cut(s) 79, 357
TseI GCWGC 6 cut(s) 1331, 1658, 1661, 1838, 1841, 1981
Tsp45I GTSAC 2 cut(s) 79, 357
TspDTI ATGAA 5 cut(s) 419, 485, 587, 1274, 1434
TspGWI ACGGA 2 cut(s) 238, 1940
TspRI CASTG 4 cut(s) 571, 1368, 1855, 2200
VpaK11BI GGWCC 6 cut(s) 150, 602, 685, 905, 1397, 2001
XapI RAATTY 1 cut(s) 1715
XbaI TCTAGA 1 cut(s) 1456
XceI RCATGY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 2 cut(s) 1382, 2104
XmaJI CCTAGG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 1219
XspI CTAG 3 cut(s) 288, 1347, 1457
Zsp2I ATGCAT 1 cut(s) 1774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.