Rmu_sc0036946.1_g000001

Belongs to the complex I 75 kDa subunit family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036946.1
Physical Location & Seq
Reverse (-)
1 .. 3593
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036946.1_g000001.1.cds

Sequence Viewer

Length: 1520 bp
atgttaggccgtggaagtggagaggaaattgggacttacgtagaaaagcttatgacaagtgaactttcaggaaatgttatagatatctgtcctgtaggagccctaacctcaaaaccatttgcatttaaagctcgtaattgggaattaaagggaacagagaccattgatgttactgatgctgttggatccaacattcgaattgatagcagaggtcccgaagtcatgcgaattgttccacgcttaaatgaggacataaatgaggaatggatatcagacaagactcgattttgttatgacggtttgaagaggcaaaggttgaatgaccctatgattcgtggtgctgatggacgctttaagcccgtgagctggcgtgatgcccttgctgttgttgctgagatggctcataaagttaagccagaagaaattgttggggttgctggtcagctgtctgatgccgagtccatgatggcactaaaagactttttaaataaaatggggtctaacaatgtgtggtgcgaaggaaatggttccaatcgtgatgctgatcttcgatctggatatataatgaacagtagcattgctggacttgagaaggcagatgcttttctattggttggcacccagccaagagtagaagctgctattgtaaatgctagaatccggaagacagtgttatctaaccaagccaaggttgggtacgttggtcctgaagctgatttaaactatgaacaccagcatcttggaacaggccccgatacacttctagaacttgctgagcatcgccaccccttttcctcagtcctcttaaatgccaaaaaccctgccattattgttggtgctgggctgtttgagagaaaagacaaggatgcaattttctcagcccttgaaaccattgccaaatatgctgatgctgtaaggcctgattggaatggatttaatgtactgcttctcaaagccgcccaggctgcagcgcttgaccttggacttgtgccagaatctgaaaacagcattgagtctgcaaaatttgtttacctgatgggtgctgatgatgttaacttagacaaggttccatctgatgcatttgtggtttatcaagggcatcatggtgaccggggtgtgtatcgggctaatgtcatcctccctgcagcagcgttcagtgaaaaggaaggaacatacgtaaatactgaagggtgctctcagcaaacattgcctgcagttccaactgtcggtgatgccagggacgactggaagatactccgtgctctatctgaggtagcaggcgtgaagctgccttatgatacagttgggaccctccgatcccggataaagaccgtggcaccaaacatcttaaacatagacgagagagagccagctactttttcattttcgattaagcctgagaccactcagaaaatggatttgactccatttggtactgctgttgataatttctatatgaccgattccatcaccagggcatcaaagataatggcacaatgcagtgcgttgctattgaagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

506

Amino Acids

55.27

Weight (kDa)

5.35

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011004)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 617, 1336
AccIII TCCGGA 1 cut(s) 660
AciI CCGC 1 cut(s) 957
AclWI GGATC 3 cut(s) 180, 193, 1311
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 2 cut(s) 729, 1206
AfaI GTAC 3 cut(s) 698, 942, 1435
AfeI AGCGCT 1 cut(s) 972
AfiI CCNNNNNNNGG 5 cut(s) 366, 688, 693, 1226, 1473
AgsI TTSAA 4 cut(s) 304, 319, 887, 1516
AjnI CCWGG 3 cut(s) 960, 1235, 1472
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 8 cut(s) 49, 131, 366, 445, 638, 713, 1288, 1373
AluI AGCT 8 cut(s) 49, 131, 366, 445, 638, 713, 1288, 1373
Alw21I GWGCWC 2 cut(s) 1196, 1264
Alw26I GTCTC 2 cut(s) 152, 1394
AlwI GGATC 3 cut(s) 180, 193, 1311
AlwNI CAGNNNCTG 1 cut(s) 998
Aor13HI TCCGGA 1 cut(s) 660
Aor51HI AGCGCT 1 cut(s) 972
AoxI GGCC 3 cut(s) 7, 748, 917
ApeKI GCWGC 6 cut(s) 638, 965, 968, 1145, 1148, 1288
ApoI RAATTY 1 cut(s) 1022
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 1 cut(s) 973
AspS9I GGNCC 4 cut(s) 212, 704, 749, 1308
AsuC2I CCSGG 2 cut(s) 1112, 1321
AsuHPI GGTGA 3 cut(s) 1118, 1241, 1462
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 3 cut(s) 212, 704, 1308
BaeI ACNNNNGTAYC 4 cut(s) 688, 721, 1425, 1458
BamHI GGATCC 1 cut(s) 185
BanI GGYRCC 2 cut(s) 617, 1336
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 1196, 1264
BbvI GCAGC 6 cut(s) 625, 952, 980, 1157, 1160, 1275
BccI CCATC 6 cut(s) 338, 391, 460, 1030, 1078, 1475
BciT130I CCWGG 3 cut(s) 962, 1237, 1474
BcnI CCSGG 2 cut(s) 1112, 1321
BcoDI GTCTC 2 cut(s) 152, 1394
BfaI CTAG 2 cut(s) 654, 764
BfmI CTRYAG 4 cut(s) 93, 966, 1143, 1212
BfoI RGCGCY 1 cut(s) 974
BglI GCCNNNNNGGC 1 cut(s) 962
BisI GCNGC 7 cut(s) 639, 957, 966, 969, 1146, 1149, 1289
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 7 cut(s) 640, 958, 967, 970, 1147, 1150, 1290
Bme1390I CCNGG 5 cut(s) 962, 1112, 1237, 1321, 1474
Bme18I GGWCC 3 cut(s) 212, 704, 1308
BmgT120I GGNCC 4 cut(s) 212, 704, 749, 1308
BmrFI CCNGG 5 cut(s) 962, 1112, 1237, 1321, 1474
BpiI GAAGAC 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 1112, 1321
BsaAI YACGTR 2 cut(s) 40, 1177
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 2 cut(s) 152, 1394
BsaJI CCNNGG 8 cut(s) 10, 687, 960, 979, 1111, 1236, 1332, 1473
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 5 cut(s) 366, 688, 693, 1226, 1473
Bse1I ACTGG 1 cut(s) 1250
Bse3DI GCAATG 3 cut(s) 576, 891, 1205
Bse8I GATNNNNATC 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 660
BseBI CCWGG 3 cut(s) 962, 1237, 1474
BseDI CCNNGG 8 cut(s) 10, 687, 960, 979, 1111, 1236, 1332, 1473
BseGI GGATG 2 cut(s) 871, 1134
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 5 cut(s) 366, 688, 693, 1226, 1473
BseMI GCAATG 3 cut(s) 576, 891, 1205
BseMII CTCAG 8 cut(s) 384, 765, 810, 891, 1211, 1260, 1389, 1421
BseNI ACTGG 1 cut(s) 1250
BseXI GCAGC 6 cut(s) 625, 952, 980, 1157, 1160, 1275
BseYI CCCAGC 2 cut(s) 621, 839
BshFI GGCC 3 cut(s) 9, 750, 919
BshNI GGYRCC 2 cut(s) 617, 1336
BsiHKAI GWGCWC 2 cut(s) 1196, 1264
BsiSI CCGG 3 cut(s) 661, 1111, 1321
BslFI GGGAC 4 cut(s) 46, 198, 1253, 1321
BslI CCNNNNNNNGG 5 cut(s) 366, 688, 693, 1226, 1473
BsmAI GTCTC 2 cut(s) 152, 1394
BsmFI GGGAC 4 cut(s) 46, 198, 1253, 1321
BsnI GGCC 3 cut(s) 9, 750, 919
Bso31I GGTCTC 2 cut(s) 152, 1394
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 103, 1196, 1264
Bsp13I TCCGGA 1 cut(s) 660
Bsp143I GATC 4 cut(s) 185, 544, 551, 1316
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 1 cut(s) 957
BspANI GGCC 3 cut(s) 9, 750, 919
BspCNI CTCAG 8 cut(s) 385, 766, 809, 890, 1210, 1261, 1390, 1420
BspEI TCCGGA 1 cut(s) 660
BspMAI CTGCAG 3 cut(s) 970, 1147, 1216
BspPI GGATC 3 cut(s) 180, 193, 1311
BspT104I TTCGAA 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 617, 1336
BspTNI GGTCTC 2 cut(s) 152, 1394
BsrDI GCAATG 3 cut(s) 576, 891, 1205
BsrI ACTGG 1 cut(s) 1250
BssECI CCNNGG 8 cut(s) 10, 687, 960, 979, 1111, 1236, 1332, 1473
BssMI GATC 4 cut(s) 185, 544, 551, 1316
BssT1I CCWWGG 2 cut(s) 687, 979
Bst2UI CCWGG 3 cut(s) 962, 1237, 1474
Bst4CI ACNGT 6 cut(s) 299, 572, 670, 1225, 1303, 1333
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 1207
BstBAI YACGTR 2 cut(s) 40, 1177
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 368, 1212, 1279, 1371
BstDEI CTNAG 9 cut(s) 393, 774, 796, 877, 1057, 1197, 1269, 1398, 1407
BstDSI CCRYGG 2 cut(s) 10, 1332
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 2 cut(s) 871, 1134
BstH2I RGCGCY 1 cut(s) 974
BstHHI GCGC 1 cut(s) 973
BstKTI GATC 4 cut(s) 188, 547, 554, 1319
BstMAI GTCTC 2 cut(s) 152, 1394
BstMBI GATC 4 cut(s) 185, 544, 551, 1316
BstMWI GCNNNNNNNGC 7 cut(s) 128, 389, 398, 902, 962, 965, 1207
BstNI CCWGG 3 cut(s) 962, 1237, 1474
BstPI GGTNACC 1 cut(s) 1106
BstSCI CCNGG 5 cut(s) 960, 1110, 1235, 1319, 1472
BstSFI CTRYAG 4 cut(s) 93, 966, 1143, 1212
BstSNI TACGTA 2 cut(s) 40, 1177
BstV1I GCAGC 6 cut(s) 625, 952, 980, 1157, 1160, 1275
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 3 cut(s) 9, 750, 919
BtgI CCRYGG 2 cut(s) 10, 1332
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 2 cut(s) 871, 1134
BtsI GCAGTG 1 cut(s) 1507
BtsIMutI CAGTG 3 cut(s) 675, 1162, 1507
Cac8I GCNNGC 4 cut(s) 368, 1212, 1279, 1371
CaiI CAGNNNCTG 1 cut(s) 998
CfoI GCGC 1 cut(s) 973
Cfr13I GGNCC 4 cut(s) 212, 704, 749, 1308
CseI GACGC 1 cut(s) 357
Csp6I GTAC 3 cut(s) 697, 941, 1434
CviAII CATG 3 cut(s) 223, 463, 1103
CviQI GTAC 3 cut(s) 697, 941, 1434
DdeI CTNAG 9 cut(s) 393, 774, 796, 877, 1057, 1197, 1269, 1398, 1407
DpnI GATC 4 cut(s) 187, 546, 553, 1318
DpnII GATC 4 cut(s) 185, 544, 551, 1316
DraI TTTAAA 3 cut(s) 127, 486, 720
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco105I TACGTA 2 cut(s) 40, 1177
Eco130I CCWWGG 2 cut(s) 687, 979
Eco147I AGGCCT 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 2 cut(s) 152, 1394
Eco32I GATATC 2 cut(s) 85, 270
Eco47I GGWCC 3 cut(s) 212, 704, 1308
Eco47III AGCGCT 1 cut(s) 972
Eco57I CTGAAG 2 cut(s) 729, 1206
Eco91I GGTNACC 1 cut(s) 1106
EcoO109I RGGNCCY 3 cut(s) 212, 749, 1308
EcoO65I GGTNACC 1 cut(s) 1106
EcoRII CCWGG 3 cut(s) 960, 1235, 1472
EcoRV GATATC 2 cut(s) 85, 270
EcoT14I CCWWGG 2 cut(s) 687, 979
EcoT22I ATGCAT 1 cut(s) 1081
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 687, 979
FaeI CATG 3 cut(s) 226, 466, 1106
FaqI GGGAC 4 cut(s) 46, 198, 1253, 1321
FatI CATG 3 cut(s) 222, 462, 1102
Fnu4HI GCNGC 7 cut(s) 639, 957, 966, 969, 1146, 1149, 1289
FokI GGATG 2 cut(s) 878, 1121
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 7 cut(s) 639, 957, 966, 969, 1146, 1149, 1289
FspBI CTAG 2 cut(s) 654, 764
GlaI GCGC 1 cut(s) 972
GluI GCNGC 7 cut(s) 639, 957, 966, 969, 1146, 1149, 1289
GsaI CCCAGC 2 cut(s) 625, 843
HaeII RGCGCY 1 cut(s) 974
HaeIII GGCC 3 cut(s) 9, 750, 919
HapII CCGG 3 cut(s) 661, 1111, 1321
HgaI GACGC 1 cut(s) 357
HhaI GCGC 1 cut(s) 973
Hin1II CATG 3 cut(s) 226, 466, 1106
Hin6I GCGC 1 cut(s) 971
HinP1I GCGC 1 cut(s) 971
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 8 cut(s) 280, 331, 458, 657, 995, 1013, 1423, 1463
HpaI GTTAAC 1 cut(s) 1054
HpaII CCGG 3 cut(s) 661, 1111, 1321
HphI GGTGA 3 cut(s) 1118, 1241, 1462
Hpy166II GTNNAC 3 cut(s) 62, 1030, 1054
Hpy188I TCNGA 7 cut(s) 274, 451, 1000, 1075, 1270, 1316, 1410
Hpy188III TCNNGA 7 cut(s) 69, 215, 536, 555, 661, 707, 764
Hpy8I GTNNAC 3 cut(s) 62, 1030, 1054
HpyAV CCTTC 4 cut(s) 512, 586, 1160, 1181
HpyCH4III ACNGT 6 cut(s) 299, 572, 670, 1225, 1303, 1333
HpyCH4IV ACGT 3 cut(s) 39, 699, 1176
HpyCH4V TGCA 8 cut(s) 122, 869, 968, 1019, 1079, 1145, 1214, 1500
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 389, 398, 902, 962, 965, 1207
HpyF3I CTNAG 9 cut(s) 393, 774, 796, 877, 1057, 1197, 1269, 1398, 1407
HpySE526I ACGT 3 cut(s) 39, 699, 1176
Hsp92II CATG 3 cut(s) 226, 466, 1106
HspAI GCGC 1 cut(s) 971
KflI GGGWCCC 1 cut(s) 1308
Kpn2I TCCGGA 1 cut(s) 660
KspAI GTTAAC 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 185, 544, 551, 1316
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 6 cut(s) 625, 952, 980, 1157, 1160, 1275
MaeI CTAG 2 cut(s) 654, 764
MaeII ACGT 3 cut(s) 39, 699, 1176
MaeIII GTNAC 2 cut(s) 169, 1106
MalI GATC 4 cut(s) 187, 546, 553, 1318
MboI GATC 4 cut(s) 185, 544, 551, 1316
MboII GAAGA 5 cut(s) 316, 431, 539, 676, 1261
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 103, 1196, 1264
MluCI AATT 9 cut(s) 27, 136, 143, 198, 228, 423, 870, 1022, 1447
MlyI GAGTC 4 cut(s) 274, 467, 1022, 1417
MmeI TCCRAC 3 cut(s) 163, 213, 1244
Mph1103I ATGCAT 1 cut(s) 1081
MroI TCCGGA 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 526
MslI CAYNNNNRTG 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 3 cut(s) 661, 1111, 1321
MspR9I CCNGG 5 cut(s) 962, 1112, 1237, 1321, 1474
MvaI CCWGG 3 cut(s) 962, 1237, 1474
MwoI GCNNNNNNNGC 7 cut(s) 128, 389, 398, 902, 962, 965, 1207
NciI CCSGG 2 cut(s) 1112, 1321
NdeII GATC 4 cut(s) 185, 544, 551, 1316
NlaIII CATG 3 cut(s) 226, 466, 1106
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 1106
NsiI ATGCAT 1 cut(s) 1081
NspV TTCGAA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 4 cut(s) 331, 657, 995, 1463
PfoI TCCNGGA 1 cut(s) 1319
PkrI GCNGC 7 cut(s) 640, 958, 967, 970, 1147, 1150, 1290
PleI GAGTC 4 cut(s) 274, 466, 1021, 1417
PpsI GAGTC 4 cut(s) 274, 466, 1021, 1417
Ppu21I YACGTR 2 cut(s) 40, 1177
PpuMI RGGWCCY 2 cut(s) 212, 1308
Psp5II RGGWCCY 2 cut(s) 212, 1308
Psp6I CCWGG 3 cut(s) 960, 1235, 1472
PspEI GGTNACC 1 cut(s) 1106
PspFI CCCAGC 2 cut(s) 621, 839
PspGI CCWGG 3 cut(s) 960, 1235, 1472
PspPI GGNCC 4 cut(s) 212, 704, 749, 1308
PspPPI RGGWCCY 2 cut(s) 212, 1308
PstI CTGCAG 3 cut(s) 970, 1147, 1216
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 3 cut(s) 698, 942, 1435
RsaNI GTAC 3 cut(s) 697, 941, 1434
RseI CAYNNNNRTG 1 cut(s) 1104
SatI GCNGC 7 cut(s) 639, 957, 966, 969, 1146, 1149, 1289
Sau3AI GATC 4 cut(s) 185, 544, 551, 1316
Sau96I GGNCC 4 cut(s) 212, 704, 749, 1308
SchI GAGTC 4 cut(s) 274, 467, 1022, 1417
ScrFI CCNGG 5 cut(s) 962, 1112, 1237, 1321, 1474
SduI GDGCHC 3 cut(s) 103, 1196, 1264
SfcI CTRYAG 4 cut(s) 93, 966, 1143, 1212
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 3 cut(s) 212, 704, 1308
SmiMI CAYNNNNRTG 1 cut(s) 1104
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SnaBI TACGTA 2 cut(s) 40, 1177
Sse9I AATT 9 cut(s) 27, 136, 143, 198, 228, 423, 870, 1022, 1447
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 1 cut(s) 957
SspMI CTAG 2 cut(s) 654, 764
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 5 cut(s) 960, 1110, 1235, 1319, 1472
StyI CCWWGG 2 cut(s) 687, 979
TaaI ACNGT 6 cut(s) 299, 572, 670, 1225, 1303, 1333
TaiI ACGT 3 cut(s) 42, 702, 1179
TaqI TCGA 4 cut(s) 196, 283, 550, 1388
TaqII GACCGA 1 cut(s) 1475
TasI AATT 9 cut(s) 27, 136, 143, 198, 228, 423, 870, 1022, 1447
TatI WGTACW 1 cut(s) 940
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 4 cut(s) 331, 657, 995, 1463
TscAI CASTG 3 cut(s) 675, 1162, 1507
TseFI GTSAC 1 cut(s) 1106
TseI GCWGC 6 cut(s) 638, 965, 968, 1145, 1148, 1288
Tsp45I GTSAC 1 cut(s) 1106
TspDTI ATGAA 3 cut(s) 581, 741, 1371
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 3 cut(s) 675, 1162, 1507
VpaK11BI GGWCC 3 cut(s) 212, 704, 1308
XapI RAATTY 1 cut(s) 1022
XbaI TCTAGA 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 2 cut(s) 689, 1411
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 2 cut(s) 654, 764
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.